Index

_

__and__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method) __new__() (simudo.mesh.topology.CellRegion static method) (simudo.mesh.topology.FacetRegion static method) __or__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method)

__sub__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method) __xor__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method)

A

A (simudo.fem.newton_solver.NewtonSolution attribute) abs() (simudo.fem.delayed_form.DelayedForm method) AbsorptionAndRadiativeRecombinationEOPMixin (class in simudo.physics.electro_optical_process) AbsorptionRangesHelper (class in simudo.physics.optical) acquire() (simudo.fem.compat.ffc_jit_lock.LockFile method) adapt() (in module simudo.mesh.refine) adapt_direction_to_gdim() (in module simudo.physics.optical) adapt_mf() (in module simudo.mesh.refine) AdaptiveStepper (class in simudo.fem.adaptive_stepper) add() (simudo.io.xdmf.PlotAddMixin method) (simudo.util.name_dict.NameDict method) add_band() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) add_BC() (simudo.fem.spatial.Spatial method) add_callable_rule() (simudo.fem.spatial.Spatial method) add_material_callable_data() (simudo.fem.spatial.Spatial method) add_material_data() (simudo.fem.spatial.Spatial method) add_prior_solution() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) add_quantity() (simudo.io.output_writer.MetaExtractorIntegrals method) add_row() (simudo.io.output_writer.MetaCSVWriter method) add_rule() (simudo.fem.spatial.Spatial method) add_surface_flux() (simudo.io.output_writer.MetaExtractorIntegrals method) add_surface_total() (simudo.io.output_writer.MetaExtractorIntegrals method) add_value_rule() (simudo.fem.spatial.Spatial method) add_volume_total() (simudo.io.output_writer.MetaExtractorIntegrals method)

after_modification() (simudo.mesh.construction_helper.InvertibleTransform method) algo_fvs_to_cell_averages() (simudo.fem.spatial.CombinedBoundaryCondition method) algo_get_fv_adjacent_cells() (simudo.fem.spatial.CombinedBoundaryCondition method) allocate_subdomain_range() (simudo.mesh.construction_helper.BaseConstructionHelper method) Alloy (class in simudo.materials.helpers) alpha (simudo.physics.optical.OpticalField attribute) already_computed_values() (in module simudo.gui.panels.shared) AluminumArsenideMaterial (class in simudo.materials.aluminumarsenide) AluminumGalliumArsenideAlloy (class in simudo.materials.aluminumgalliumarsenide) AlwaysTruePredicate (class in simudo.mesh.mesh_entity_predicate) AndMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) arg_matplotlib() (in module simudo.plot.plot) as_isolated_method_in_module() (simudo.pyaml.pyaml1.CodeGenerator method) assert_compatible_predicates() (simudo.mesh.mesh_entity_predicate.BaseMeshEntityPredicate class method) assert_gen_reg() (simudo.mesh.domaintag_mshr.DomainTagTest method) assert_rel() (simudo.mesh.domaintag_mshr.DomainTagTest method) assign() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) assign_scalar() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) AssignmentError at_thermal_equilibrium (simudo.physics.poisson_drift_diffusion.Poisson property) at_values (simudo.gui.model.CheckpointStageSettings attribute) AttrPrefixProxy (class in simudo.util.attrproxy) auto_cache (simudo.pyaml.pyaml1.CodeTag attribute) autosave() (simudo.gui.app.SimudoApp method)

B

b (simudo.fem.newton_solver.NewtonSolution attribute) b_norm (simudo.fem.newton_solver.NewtonSolution attribute) backend_from_profile() (in module simudo.gui.runner_backends) BadSimpleSiliconMaterial (class in simudo.physics.material) Band (class in simudo.gui.model) (class in simudo.physics.poisson_drift_diffusion) band (simudo.physics.heterojunction.ThermionicHeterojunction attribute) band_bcs (simudo.gui.model.Contact attribute) band_names (simudo.gui.model.Project property) band_spatial_get() (simudo.physics.electro_optical_process.TrapEOPMixin method) bands (simudo.gui.model.InterfaceBCSpec attribute) (simudo.gui.model.Project attribute) (simudo.physics.optical.AbsorptionRangesHelper property) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) BandsPanel (class in simudo.gui.panels.bands) BaseAdaptiveStepper (class in simudo.fem.adaptive_stepper) BaseConstructionHelper (class in simudo.mesh.construction_helper) BaseCustomTag (class in simudo.io.h5yaml) (class in simudo.pyaml.pyaml1) BaseDolfinFunctionRenderFrame (class in simudo.fem.plot) BaseDolfinMeshFunctionTag (class in simudo.io.h5yaml) BaseInterval1DTag (class in simudo.mesh.interval1dtag) BaseMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) BaseText (class in simudo.plot.plot) BatchLauncher (class in simudo.gui.batch)

BatchSpec (class in simudo.gui.batch) BatchTarget (class in simudo.gui.batch) BatchVariation (class in simudo.gui.batch) bbox_vecs() (in module simudo.fem.expr) bc_cells (simudo.fem.offset_partitioning.PartitionOffsets attribute) bcs (simudo.fem.spatial.Spatial attribute) (simudo.gui.model.Interface attribute) BCsPanel (class in simudo.gui.panels.bcs) BeerLambert (class in simudo.physics.electro_optical_process) bin_edges (simudo.gui.model.OpticalFieldSet attribute) Blackbody (class in simudo.util.blackbody) blackbody_I_E() (simudo.util.blackbody.Blackbody method) blackbody_I_E_solar() (simudo.util.blackbody.Blackbody method) blackbody_I_E_solar_on_earth() (simudo.util.blackbody.Blackbody method) BlackbodyIntensity (class in simudo.gui.model) Bob (class in simudo.mesh.construction_helper_example) both() (simudo.mesh.topology.FacetRegion method) boundary (simudo.physics.heterojunction.ThermionicHeterojunction attribute) boundary() (simudo.mesh.facet.FacetsManager method) (simudo.mesh.topology.CellRegion method) BoundaryCondition (class in simudo.fem.spatial) break_criteria_cb (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) build_combinations() (in module simudo.gui.batch) build_problems() (in module simudo.gui.simudo_1d_runner) bundled_lib_dir (simudo.gui.app.SimudoApp property)

C

call() (simudo.io.output_writer.MetaExtractorBandInfo method) (simudo.io.output_writer.MetaExtractorIntegrals method) (simudo.util.todo.TODO method) callable_top_hats (simudo.gui.model.Process attribute) callable_type (simudo.gui.panels.mat_ast.PropertyInfo attribute) callable_value_rules (simudo.fem.spatial.Spatial attribute) CallableTopHat (class in simudo.gui.model) CallableValueRule (class in simudo.fem.spatial) canonicalize_key() (in module simudo.fem.spatial) card() (in module simudo.gui.panels.shared) cartesian_product() (in module simudo.util.cartesian_product) cell_function (simudo.fem.mesh_util.MeshUtil property) cell_function_function (simudo.fem.mesh_util.MeshUtil attribute) cell_predicate_expr_threshold() (in module simudo.mesh.refine) cell_to_cells_adjacency_via_facet (simudo.fem.mesh_data.MeshData attribute) cell_value_internal() (simudo.mesh.facet.FacetsManager method) CellFunctionFunction (class in simudo.fem.expr) CellMidpointExpression (class in simudo.fem.expr) CellRegion (class in simudo.mesh.topology) CellRegions (class in simudo.mesh.topology) cells_at_ix() (simudo.mesh.interval1dtag.Interval1DMesh method) (simudo.mesh.interval1dtag.Interval1DMeshMixin.Interval1DMesh method) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) check_band_types() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.TrapEOPMixin method) check_bcs_resolve_to_facets() (simudo.fem.adaptive_stepper.AdaptiveStepper method) checkpoint_at_end (simudo.gui.model.CheckpointStageSettings attribute) checkpoint_reload_yaml (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) checkpoint_write_filename (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) checkpoint_write_values (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) checkpoints (simudo.gui.model.SimulationSettings attribute) CheckpointsSettings (class in simudo.gui.model) CheckpointStageSettings (class in simudo.gui.model) CInterval (class in simudo.mesh.interval1dtag) class_name (simudo.gui.panels.mat_ast.ClassInfo attribute) ClassInfo (class in simudo.gui.panels.mat_ast) ClassProperty (class in simudo.io.h5yaml) cleanup_prior_solutions() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) clear() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) clever_legend() (in module simudo.plot.plot) clip_finite_extent (simudo.io.output_writer.OutputWriter attribute) clip_intervals() (in module simudo.mesh.interval1dtag) close() (simudo.fem.ipython.LineCutPlot method) (simudo.io.csv.LineCutCsvPlot method) (simudo.io.xdmf.XdmfPlot method) cls (simudo.gui.model.Process attribute) code (simudo.pyaml.pyaml1.CodeTag attribute) CodeGenerator (class in simudo.pyaml.pyaml1)

CodeTag (class in simudo.pyaml.pyaml1) collapse_repeated_warnings (simudo.util.logging.TypicalLoggingSetup attribute) color (simudo.gui.model.Layer attribute) combined_b_norm (simudo.fem.newton_solver.NewtonSolution attribute) combined_du_norm (simudo.fem.newton_solver.NewtonSolution attribute) CombinedBoundaryCondition (class in simudo.fem.spatial) CombiningMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) common_load_spatial_data() (in module simudo.example.marti2002.marti2002_plot) compact_param_label() (in module simudo.gui.batch) compute_facets() (simudo.mesh.construction_helper.BaseConstructionHelper method) compute_meta() (simudo.util.xcsv.XCSVWriter method) compute_V() (simudo.fem.plot.BaseDolfinFunctionRenderFrame method) (simudo.fem.plot.DolfinFunctionRenderFrame method) computed_properties (simudo.gui.panels.mat_ast.ClassInfo property) concentration (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) console_formatter (simudo.util.logging.TypicalLoggingSetup attribute) constantify_if_literal() (in module simudo.fem.expr) constants (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) ConstantStepperMixin (class in simudo.fem.adaptive_stepper) ConstructionHelperIntervalProduct2DMesh (class in simudo.mesh.construction_helper) ConstructionHelperIntervalProduct2DMesh.Interval1DTag (class in simudo.mesh.construction_helper) ConstructionHelperLayeredStructure (class in simudo.mesh.construction_helper) ConstructionHelperManualCellTagging (class in simudo.mesh.construction_helper) ConstructionHelperMshr (class in simudo.mesh.construction_helper) ConstructionHelperPygmsh2 (class in simudo.mesh.construction_helper) Contact (class in simudo.gui.model) contacts (simudo.gui.model.Project attribute) container_name (simudo.gui.batch.BatchTarget attribute) coordinates (simudo.fem.plot.DolfinFunctionRenderFrame attribute) (simudo.fem.plot.DolfinFunctionRenderLineCutFrame attribute) (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) coordinates() (simudo.fem.plot.LineCutter method) copy() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) (simudo.fem.newton_solver.NewtonSolution method) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) (simudo.util.name_dict.NameDict method) copy_mpp() (in module simudo.example.marti2002.marti2002_plot) copy_to() (simudo.fem.newton_solver.NewtonSolution method) copyable (simudo.gui.panels.mat_ast.PropertyInfo attribute) copyable_properties (simudo.gui.panels.mat_ast.ClassInfo property) create_function_from_x_values() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) create_plot() (simudo.fem.ipython.LineCutPlot method) create_renderer() (simudo.fem.ipython.LineCutPlot method) create_solution() (simudo.fem.newton_solver.NewtonSolver method) custom_eop_files (simudo.gui.model.Project attribute)

D

DarkEOPMixin (class in simudo.physics.electro_optical_process) debug_cvs_to_mf() (simudo.mesh.construction_helper.BaseConstructionHelper method) debug_filename (simudo.util.logging.TypicalLoggingSetup property) debug_fill_with_zero_except_bc (simudo.fem.offset_partitioning.PartitionOffsets attribute) debug_find_unconverged_parameters (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) debug_fvs_to_mf() (simudo.mesh.construction_helper.BaseConstructionHelper method) debug_plot() (simudo.mesh.construction_helper.BaseConstructionHelper method) default_assumptions (simudo.fem.sympy_dolfin_printer.DolfinConstant attribute) default_bands() (in module simudo.gui.model) default_contacts() (in module simudo.gui.model) default_extract_params (simudo.fem.ipython.LineCutPlot attribute) default_layer_color() (in module simudo.gui.model) DEFAULT_MESH_DIMENSION (in module simudo.gui.simudo_1d_runner) default_mesh_dimension (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh attribute) default_parameters (simudo.fem.newton_solver.NewtonSolver attribute) DEFAULT_TEMPERATURE_K (in module simudo.gui.simudo_1d_runner) default_value (simudo.fem.plot.DolfinFunctionRenderer attribute) DefaultProblemDataChildMixin (class in simudo.physics.problem_data_child) DelayedForm (class in simudo.fem.delayed_form) delete_attached() (in module simudo.io.h5yaml) delete_units() (simudo.fem.delayed_form.DelayedForm method) delta_time (simudo.util.logging.TypicalLoggingSetup attribute) depth (simudo.pyaml.pyaml1.CodeGenerator attribute) derivative() (simudo.fem.ufl_extra.ExpM1 method) (simudo.fem.ufl_extra.LambertW0 method) (simudo.fem.ufl_extra.Ln1P method) description (simudo.gui.model.Project attribute) df_add_drift_diffusion_terms() (in module simudo.plot.postprocessing) df_mask_IB() (in module simudo.example.marti2002.marti2002_plot) dict (simudo.physics.material.Material attribute) DictAttrProxy (class in simudo.util.attrproxy) dim (simudo.mesh.construction_helper.BaseConstructionHelper attribute) (simudo.mesh.mesh_entity_predicate.BaseMeshEntityPredicate attribute) (simudo.mesh.mesh_entity_predicate.DirectionalEdgeLengthPredicate attribute) DimensionAdapterPredicate (class in simudo.mesh.mesh_entity_predicate) dir_as_prefix() (in module simudo.util.os) direction (simudo.gui.model.OpticalField attribute) (simudo.gui.model.OpticalFieldSet attribute) DirectionalEdgeLengthPredicate (class in simudo.mesh.mesh_entity_predicate) directory (simudo.gui.model.CheckpointsSettings attribute) dirname() (in module simudo.example.marti2002.marti2002) discover_material_classes() (in module simudo.gui.app) display (simudo.gui.panels.mat_ast.PropertyInfo attribute) display() (simudo.fem.ipython.DisplayMixin method) DisplayMixin (class in simudo.fem.ipython) distance_factor (simudo.util.blackbody.Blackbody attribute) dless() (simudo.fem.mesh_util.MeshUtil method) do_after_last_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_assemble_system() (simudo.fem.newton_solver.NewtonSolution method) do_before_first_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_init_assembler() (simudo.fem.newton_solver.NewtonSolver method) do_init_parameters() (simudo.fem.newton_solver.NewtonSolver method) do_init_solution() (simudo.fem.newton_solver.NewtonSolver method)

do_intermediate_sync() (simudo.gui.runner_backends.RunHandle method) (simudo.gui.runner_backends.SSHRunHandle method) do_invalidate_cache() (simudo.fem.newton_solver.NewtonSolution method) do_iteration() (simudo.fem.newton_solver.NewtonSolver method) do_linear_solve() (simudo.fem.newton_solver.NewtonSolution method) do_loop() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) do_main() (in module simudo.example.pn_benchmark.pn_benchmark_plot) do_post_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_pre_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_single_analysis_summary() (in module simudo.example.pn_benchmark.pn_benchmark_plot) do_step() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) do_update_solution() (simudo.fem.newton_solver.NewtonSolver method) docker_container (simudo.gui.model.ExecutionProfile attribute) docker_container_root (simudo.gui.model.ExecutionProfile attribute) docker_host_root (simudo.gui.model.ExecutionProfile attribute) docker_simudo_path (simudo.gui.model.ExecutionProfile attribute) DockerBackend (class in simudo.gui.runner_backends) DockerRunHandle (class in simudo.gui.runner_backends) dofs_coordinates() (in module simudo.fem.expr) dolfin (simudo.util.logging.TypicalLoggingSetup attribute) dolfin_interp1d() (in module simudo.fem.expr) DolfinConstant (class in simudo.fem.sympy_dolfin_printer) DolfinFunctionLineCutRenderer (class in simudo.fem.plot) DolfinFunctionRenderer (class in simudo.fem.plot) DolfinFunctionRenderFrame (class in simudo.fem.plot) DolfinFunctionRenderLineCutFrame (class in simudo.fem.plot) DolfinFunctionTag (class in simudo.io.h5yaml) DolfinH5Manager (class in simudo.io.h5yaml) DolfinMeshFunctionBoolTag (class in simudo.io.h5yaml) DolfinMeshFunctionDoubleTag (class in simudo.io.h5yaml) DolfinMeshFunctionIntTag (class in simudo.io.h5yaml) DolfinMeshFunctionSizetTag (class in simudo.io.h5yaml) DolfinMeshTag (class in simudo.io.h5yaml) DolfinObjectTag (class in simudo.io.h5yaml) DolfinPrinter (class in simudo.fem.sympy_dolfin_printer) domain_relationship() (simudo.mesh.domaintag_mshr.DomainTag method) (simudo.mesh.domaintag_mshr.MshrDomainTag method) domain_relationship_tabulate() (simudo.mesh.domaintag_mshr.DomainTag method) DomainTag (class in simudo.mesh.domaintag_mshr) DomainTagTest (class in simudo.mesh.domaintag_mshr) doprint() (simudo.fem.sympy_dolfin_printer.DolfinPrinter method) downproject() (in module simudo.fem.ipython) dst_band (simudo.gui.model.Process attribute) dst_band_is_trap (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert attribute) (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) dtypes_dict (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) du_mask_array (simudo.fem.newton_solver.NewtonSolver attribute) du_norm (simudo.fem.newton_solver.NewtonSolution attribute) dump() (in module simudo.io.h5yaml)

E

E_high (simudo.gui.model.CallableTopHat attribute) E_high_unit (simudo.gui.model.CallableTopHat attribute) E_low (simudo.gui.model.CallableTopHat attribute) E_low_unit (simudo.gui.model.CallableTopHat attribute) E_max (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) E_max_unit (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) E_min (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) E_min_unit (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) easy_add_band() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_add_electro_optical_process() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_add_electrostatic_potential_BC() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_add_field() (simudo.physics.optical.Optical method) easy_add_two_traps_to_pdd() (simudo.physics.electro_optical_process.TrapEOPMixin class method) easy_auto_pre_solve() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_create_newton_solver() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) effective_energy_level (simudo.physics.poisson_drift_diffusion.NondegenerateBand property) efficiency_analysis() (in module simudo.example.fourlayer.fourlayer_example) electro_optical_processes (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) ElectroOpticalProcess (class in simudo.physics.electro_optical_process) element (simudo.fem.function_space.MixedFunctionSpace attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) element() (simudo.fem.mesh_util.MeshUtil method) element_hdiv() (simudo.fem.mesh_util.MeshUtil method) emission_velocity (simudo.physics.heterojunction.ThermionicHeterojunction property) emit() (simudo.pyaml.pyaml1.CodeGenerator method) emit_eval_auto_call() (simudo.pyaml.pyaml1.CodeGenerator method) emit_str() (simudo.pyaml.pyaml1.CodeGenerator method) emptyPrinter() (simudo.fem.sympy_dolfin_printer.DolfinPrinter method) enable_radiative_recombination (simudo.physics.electro_optical_process.AbsorptionAndRadiativeRecombinationEOPMixin attribute) (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) enabled (simudo.gui.model.IntensityRampSettings attribute) (simudo.gui.model.VoltageSweepSettings attribute) end (simudo.gui.model.OverlayRegion attribute) energy_unit (simudo.physics.optical.AbsorptionRangesHelper property)

ensure_dir() (simudo.io.h5yaml.DolfinH5Manager method) ensure_new_dir() (in module simudo.gui.batch) (in module simudo.gui.simudo_1d_runner) ensure_parent_dir() (simudo.util.logging.TypicalLoggingSetup method) ensure_quantity() (simudo.fem.mesh_util.MeshUtil method) entity_dofs() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) enumerate_sweep_params() (in module simudo.gui.batch) env (simudo.pyaml.pyaml1.CodeTag attribute) escaped (simudo.pyaml.multidict.EscapeMultidictKey attribute) EscapeMultidictKey (class in simudo.pyaml.multidict) eval_cell() (simudo.fem.expr.CellMidpointExpression method) evaluate() (simudo.fem.ufl_extra.LambertW0 method) evaluate_function_at_coordinates() (in module simudo.fem.plot) (simudo.fem.plot.BaseDolfinFunctionRenderFrame method) evaluate_topology() (simudo.fem.mesh_data.MeshData method) execution (simudo.gui.model.Project attribute) ExecutionProfile (class in simudo.gui.model) ExitOptimizerException expects_obj() (in module simudo.example.marti2002.marti2002_plot) ExplicitIntensity (class in simudo.gui.model) ExpM1 (class in simudo.fem.ufl_extra) expm1() (in module simudo.fem.ufl_extra) extent (simudo.fem.ipython.LineCutPlot attribute) (simudo.gui.model.Band attribute) extent_boundary_bc_left (simudo.gui.model.Band attribute) extent_boundary_bc_right (simudo.gui.model.Band attribute) extent_unit (simudo.gui.model.OverlayRegion attribute) external (simudo.fem.spatial.BoundaryCondition attribute) extra_iterations (simudo.fem.newton_solver.NewtonSolver attribute) extra_regions (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure attribute) extract() (simudo.fem.plot.BaseDolfinFunctionRenderFrame method) extract_classes_from_file() (in module simudo.gui.panels.mat_ast) extract_IB_region_only() (in module simudo.example.marti2002.marti2002_plot) extract_jv() (in module simudo.example.marti2002.marti2002_plot) extract_max_abs_IB_current() (in module simudo.example.marti2002.marti2002_plot) extract_params (simudo.fem.plot.BaseDolfinFunctionRenderFrame attribute) extracted_T (simudo.fem.plot.DolfinFunctionRenderLineCutFrame property) extracted_V (simudo.fem.plot.BaseDolfinFunctionRenderFrame attribute) ExtractedBoundaryCondition (class in simudo.fem.spatial) ExtractorHandle (class in simudo.gui.runner_backends)

F

facet2d_angle() (in module simudo.mesh.facet) facet_function (simudo.fem.mesh_util.MeshUtil property) FacetRegion (class in simudo.mesh.topology) FacetRegions (class in simudo.mesh.topology) FacetsManager (class in simudo.mesh.facet) factor (simudo.gui.model.MeshParams attribute) fchainmap() (in module simudo.fem.ipython) field_intensity_integral() (simudo.util.blackbody.Blackbody method) field_intensity_integral_on_earth() (simudo.util.blackbody.Blackbody method) fields (simudo.physics.optical.Optical attribute) figclosing() (in module simudo.plot.plot) file_path (simudo.gui.panels.mat_ast.ClassInfo attribute) file_save (simudo.physics.poisson_drift_diffusion.SaveItem attribute) filename_from_key() (simudo.io.h5yaml.DolfinH5Manager method) filepath (simudo.gui.model.Project attribute) filter() (simudo.util.logging.NameLevelFilter method) finalize_msgs() (simudo.gui.runner_backends.RunHandle method) (simudo.gui.runner_backends.SSHRunHandle method) find_globals() (in module simudo.pyaml.astglobals) find_unconverged_parameters() (simudo.fem.adaptive_stepper.AdaptiveStepper method) FindFreeVariablesClassWarning first_cell_value (simudo.mesh.domaintag_mshr.DomainTag attribute) (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) fix_facets_after_subdivision() (simudo.mesh.construction_helper.BaseConstructionHelper method) fix_undefined_facets_after_subdivision() (simudo.mesh.facet.FacetsManager method) fixup_titles() (in module simudo.example.marti2002.marti2002) flip() (simudo.mesh.topology.FacetRegion method) force_single_thread (simudo.fem.ipython.LineCutPlot.RenderingPlot attribute) force_ufl() (in module simudo.fem.expr) format_parameter() (simudo.io.output_writer.OutputWriter method) format_string_system() (in module simudo.util.string_system) fractions (simudo.materials.alloy_optics.OpticsInterpolator attribute) frame_class (simudo.fem.plot.DolfinFunctionLineCutRenderer attribute) (simudo.fem.plot.DolfinFunctionRenderer attribute) from_axes() (simudo.plot.plot.LegendText class method) from_dict() (simudo.gui.batch.BatchSpec class method) (simudo.gui.batch.BatchTarget class method) (simudo.gui.batch.BatchVariation class method) (simudo.gui.model.ValueUnit class method)

from_existing_mesh_cf() (simudo.mesh.construction_helper.BaseConstructionHelper class method) from_nice_obj() (simudo.fem.newton_solver.NewtonSolver class method) from_sum() (simudo.fem.delayed_form.DelayedForm class method) from_union() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry class method) from_yaml() (simudo.io.h5yaml.DolfinObjectTag class method) (simudo.io.h5yaml.FrozenSetTag class method) (simudo.io.h5yaml.PintQTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) (simudo.pyaml.pyaml1.YCode2Tag class method) (simudo.pyaml.pyaml1.YCodeTag class method) FrozenSetTag (class in simudo.io.h5yaml) FSRError fullsplit() (in module simudo.util.os) Function() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) Function_eval_many() (in module simudo.fem.extra_bindings) function_space (simudo.fem.function_space.MixedFunctionSpace attribute) function_space_cache (simudo.fem.function_space.MixedFunctionHelper property) (simudo.fem.mesh_util.MeshUtil attribute) (simudo.physics.problem_data.ProblemData attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin property) function_subspace_registry (simudo.fem.mesh_util.MeshUtil attribute) (simudo.physics.optical.OpticalField property) (simudo.physics.problem_data.ProblemData attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin property) function_subspaces (simudo.fem.function_space.MixedFunctionSpace attribute) FunctionSpace() (simudo.fem.function_space_cache.FunctionSpaceCache method) FunctionSpaceCache (class in simudo.fem.function_space_cache) FunctionSubspaceRegistry (class in simudo.fem.function_subspace_registry) FunctionTypeError fv_adjacent_cellavg (simudo.fem.spatial.CombinedBoundaryCondition attribute) fv_adjacent_cells (simudo.fem.spatial.CombinedBoundaryCondition attribute) fv_adjacent_cells_function (simudo.fem.spatial.CombinedBoundaryCondition attribute) fv_set (simudo.fem.spatial.CombinedBoundaryCondition attribute)

G

g (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.Band property) GalliumArsenideMaterial (class in simudo.materials.galliumarsenide) GalliumArsenideNitrideAlloy (class in simudo.materials.galliumarsenidenitride) GalliumNitrideMaterial (class in simudo.materials.galliumnitride) gdim (simudo.mesh.construction_helper.BaseConstructionHelper attribute) generate() (in module simudo.example.marti2002.marti2002) generate_base32_token() (in module simudo.util.base32_token) generate_intersection_regions() (simudo.mesh.domaintag_mshr.DomainTag method) generate_mesh() (simudo.mesh.construction_helper.BaseConstructionHelper method) (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh method) (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) (simudo.mesh.construction_helper.ConstructionHelperMshr method) (simudo.mesh.construction_helper.ConstructionHelperPygmsh2 method) generate_sub_yamls() (in module simudo.gui.batch) GeneratorHelper (simudo.mesh.construction_helper.ConstructionHelperPygmsh2 attribute) geometric_factor (simudo.util.blackbody.Blackbody attribute) GeometricallyExpandingMeshInterval (class in simudo.mesh.interval1dtag) GermaniumMaterial (class in simudo.example.heterojunction.germanium) (class in simudo.materials.germanium) get() (simudo.fem.spatial.Spatial method) get_absorption_bounds() (simudo.physics.electro_optical_process.RadiativeEOPMixin method) get_alpha() (simudo.physics.electro_optical_process.BeerLambert method) (simudo.physics.electro_optical_process.DarkEOPMixin method) (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.IBBeerLambert method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_alpha_by_optical_field() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_alpha_pdd_expr() (simudo.physics.optical.OpticalField method) get_band_generation_sign() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.TwoBandEOPMixin method) get_callable() (simudo.fem.spatial.Spatial method) get_capture_coefficient() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_constant_alpha() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert method) get_constant_sigma_opt() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_core_count() (simudo.gui.runner_backends.DockerBackend method) (simudo.gui.runner_backends.LocalBackend method) (simudo.gui.runner_backends.RunnerBackend method) (simudo.gui.runner_backends.SSHBackend method) get_current_indent() (simudo.pyaml.pyaml1.CodeGenerator method) get_current_param_value() (in module simudo.gui.batch) get_debug_facet_probe() (simudo.fem.mesh_util.MeshUtil method) get_debug_probe() (simudo.fem.mesh_util.MeshUtil method) get_default_extract_params() (simudo.fem.ipython.LineCutPlot method) get_degeneracy_factor() (simudo.physics.electro_optical_process.SRHRecombination method) get_dict() (simudo.example.heterojunction.germanium.GermaniumMaterial method) (simudo.example.heterojunction.silicon.SiliconMaterial method) (simudo.example.heterojunction.silicongermanium.SiliconGermaniumAlloy method) (simudo.example.marti2002.marti2002.IBSemiconductor method) (simudo.example.marti2002.marti2002.PFrontSurfaceField method) (simudo.example.marti2002.marti2002.Semiconductor method) (simudo.example.pn_benchmark.pn_benchmark.SentaurusComparisonSilicon method) (simudo.example.pn_benchmark.pn_benchmark.SimpleSiliconMaterial method) (simudo.materials.aluminumarsenide.AluminumArsenideMaterial method) (simudo.materials.aluminumgalliumarsenide.AluminumGalliumArsenideAlloy method) (simudo.materials.galliumarsenide.GalliumArsenideMaterial method) (simudo.materials.galliumarsenidenitride.GalliumArsenideNitrideAlloy method) (simudo.materials.galliumnitride.GalliumNitrideMaterial method) (simudo.materials.germanium.GermaniumMaterial method) (simudo.materials.ib_test_material.IBTestMaterial method) (simudo.materials.indiumaluminumarsenide.IndiumAluminumArsenideAlloy method) (simudo.materials.indiumarsenide.IndiumArsenideMaterial method) (simudo.materials.silicon.SiliconMaterial method) (simudo.materials.silicongermanium.SiliconGermaniumAlloy method) (simudo.physics.material.BadSimpleSiliconMaterial method) (simudo.physics.material.Material method) (simudo.physics.material.SimpleSiliconMaterial method) get_effective_execution_profile() (simudo.gui.app.SimudoApp method) get_element() (simudo.fem.function_space.MixedFunctionSpace method) get_essential_bc() (simudo.fem.spatial.CombinedBoundaryCondition method) get_essential_bcs() (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.Band method) (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_execution_profile_for_type() (simudo.gui.app.SimudoApp method) get_frame() (simudo.fem.plot.DolfinFunctionRenderer method) get_full_function_functionspace() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_full_function_functionspace_indices() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_function_space() (simudo.fem.function_space.MixedFunctionSpace method) (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_fv_adjacent_cellavg() (simudo.fem.spatial.CombinedBoundaryCondition method) get_g_pdd_expr() (simudo.physics.optical.OpticalField method) get_generation() (simudo.physics.electro_optical_process.ElectroOpticalProcess method)

get_generation_optical() (simudo.physics.electro_optical_process.BeerLambert method) (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.IBBeerLambert method) get_generation_user() (simudo.physics.electro_optical_process.AbsorptionAndRadiativeRecombinationEOPMixin method) (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.NonRadiativeTrap method) (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap method) (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap method) (simudo.physics.electro_optical_process.SRHRecombination method) (simudo.physics.electro_optical_process.StaticGeneration method) get_iv_prefix() (simudo.io.output_writer.OutputWriter method) get_last_successful() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) get_library_dirs() (simudo.gui.app.SimudoApp method) get_mapped_parameter() (simudo.fem.adaptive_stepper.ConstantStepperMixin method) get_meta_csv_file() (simudo.io.output_writer.OutputWriter method) get_mixed_bc_pair() (simudo.fem.spatial.Spatial method) get_natural_bc() (simudo.fem.spatial.CombinedBoundaryCondition method) get_object_mpi_comm() (simudo.io.h5yaml.DolfinObjectTag class method) get_omega() (simudo.fem.newton_solver.NewtonSolver method) get_optical_generation() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_optical_generation_by_optical_field() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_photon_flux_on_pdd_mesh() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_plot_prefix() (simudo.io.output_writer.OutputWriter method) get_property_keys_for_material() (in module simudo.gui.panels.mat_ast) get_pyplot() (in module simudo.matplotlib_backend) get_quantum_yield() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_quantum_yield_by_optical_field() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_radiative_pseudo_capture_coefficient() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_radiative_recombination() (simudo.physics.electro_optical_process.BeerLambert method) (simudo.physics.electro_optical_process.IBBeerLambert method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_refractive_index() (simudo.physics.electro_optical_process.BeerLambert method) get_renderer_extract_params() (simudo.fem.ipython.LineCutPlot method) get_shockley_read_trap_generation() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_sigma() (simudo.physics.electro_optical_process.IBBeerLambert method) get_sigma_opt() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_sigma_th() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_single_essential_bc() (simudo.fem.spatial.Spatial method) get_solution_function() (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_spatial_data() (simudo.example.fourlayer.sweep_extraction.SweepData method) get_SR_generation() (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap method) get_SR_generation_diff_sign() (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap method) get_SR_generation_same_sign() (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap method) get_strandberg_I() (simudo.physics.electro_optical_process.RadiativeEOPMixin method) get_subfunction() (simudo.fem.function_space.WithSubfunctionsMixin method) get_subproblem_children() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_subspace_descriptors_for_solution_space() (simudo.physics.optical.OpticalField method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_tau() (simudo.physics.electro_optical_process.SRHRecombination method) (simudo.physics.electro_optical_process.TrapEOPMixin method) get_to_save() (simudo.physics.optical.Optical method) (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.GetToSaveMixin method) (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin method) (simudo.physics.poisson_drift_diffusion.Poisson method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_transition_bounds() (simudo.physics.optical.AbsorptionRangesHelper method) get_transition_lower_bounds() (simudo.physics.optical.AbsorptionRangesHelper method) get_trap_concentration() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_trap_energy_level() (simudo.physics.electro_optical_process.TrapEnergyLevelMixin method) get_trap_process_name() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_u1() (simudo.physics.electro_optical_process.TrapEnergyLevelMixin method) get_v_th() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_vanilla_bc_pair() (simudo.fem.spatial.Spatial method) get_vector_and_indices() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_vector_and_subspace_info() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_weak_form() (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.Band method) (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) GetToSaveMixin (class in simudo.physics.poisson_drift_diffusion) goal_abbreviated (simudo.physics.problem_data.ProblemData property) grid_values (simudo.materials.alloy_optics.OpticsInterpolator attribute) gui_hint (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB attribute) (simudo.physics.electro_optical_process.NonRadiativeTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) (simudo.physics.electro_optical_process.StaticGeneration attribute)

H

has_converged() (simudo.fem.newton_solver.NewtonSolver method) has_nans (simudo.fem.newton_solver.NewtonSolution attribute) helper_test_roundtrip() (simudo.io.h5yaml.SolutionIOTest method) hj_condition_filename (simudo.io.output_writer.OutputWriter attribute) hj_interface_condition (simudo.io.output_writer.OutputWriter attribute)

hj_position (simudo.io.output_writer.OutputWriter attribute) hj_test_eps (simudo.io.output_writer.OutputWriter attribute) hj_test_y (simudo.io.output_writer.OutputWriter attribute) HJBC_enhancement (simudo.gui.model.InterfaceBCSpec attribute) (simudo.physics.heterojunction.ThermionicHeterojunction attribute)

I

IB_band_diagram() (in module simudo.example.fourlayer.sweep_extraction) IB_generation_diagram() (in module simudo.example.fourlayer.sweep_extraction) IB_mask() (simudo.example.fourlayer.sweep_extraction.SweepData method) IBBeerLambert (class in simudo.physics.electro_optical_process) IBSemiconductor (class in simudo.example.marti2002.marti2002) IBTestMaterial (class in simudo.materials.ib_test_material) ignore_aliases() (simudo.io.h5yaml.XDumper method) IncompatibleFunctionSpacesError indent_spaces (simudo.pyaml.pyaml1.CodeGenerator attribute) IndiumAluminumArsenideAlloy (class in simudo.materials.indiumaluminumarsenide) IndiumArsenideMaterial (class in simudo.materials.indiumarsenide) inf_upper_bound (simudo.physics.optical.AbsorptionRangesHelper property) info_filename (simudo.util.logging.TypicalLoggingSetup property) init_all() (simudo.fem.ipython.LineCutPlot method) init_fig() (simudo.fem.ipython.LineCutPlot method) init_plots() (simudo.fem.ipython.LineCutPlot method) init_renderers() (simudo.fem.ipython.LineCutPlot method) initial_msgs() (simudo.gui.runner_backends.RunHandle method) (simudo.gui.runner_backends.SSHRunHandle method) initialize_data() (simudo.materials.alloy_optics.OpticsInterpolator method) initialize_from() (simudo.physics.optical.Optical method) (simudo.physics.poisson_drift_diffusion.InitializeFromByAttributesMixin method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) initialize_from_attributes (simudo.physics.optical.OpticalFieldMSORTE attribute) (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) InitializeFromByAttributesMixin (class in simudo.physics.poisson_drift_diffusion) InitKwSetattr (class in simudo.pyaml.pyaml1) inplace_dict_map() (in module simudo.mesh.construction_helper) input_type (simudo.gui.model.ExplicitIntensity attribute) InRadiusCellPredicate (class in simudo.mesh.mesh_entity_predicate) inside_absorption_bounds_conditional() (simudo.physics.electro_optical_process.RadiativeEOPMixin method) intensity (simudo.gui.model.OpticalField attribute) intensity_ramp (simudo.gui.model.CheckpointsSettings attribute) (simudo.gui.model.SimulationSettings attribute)

IntensityRampSettings (class in simudo.gui.model) Interface (class in simudo.gui.model) interface_quadrature_degree (simudo.physics.heterojunction.ThermionicHeterojunction attribute) InterfaceBCSpec (class in simudo.gui.model) interfaces (simudo.gui.model.Project attribute) IntermediateBand (class in simudo.physics.poisson_drift_diffusion) internal (simudo.fem.spatial.BoundaryCondition attribute) internal() (simudo.mesh.facet.FacetsManager method) internal_facets() (simudo.mesh.topology.CellRegion method) Interval (class in simudo.mesh.interval1dtag) Interval1DMesh (class in simudo.mesh.interval1dtag) Interval1DMeshMixin (class in simudo.mesh.interval1dtag) Interval1DMeshMixin.Interval1DMesh (class in simudo.mesh.interval1dtag) Interval1DTag (class in simudo.mesh.interval1dtag) interval_1d_mesh (simudo.mesh.interval1dtag.Interval1DMeshMixin attribute) interval_1d_tag (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh attribute) intervals_to_subdomains() (simudo.mesh.interval1dtag.BaseInterval1DTag method) InvertibleTransform (class in simudo.mesh.construction_helper) is_callable (simudo.gui.panels.mat_ast.PropertyInfo attribute) is_close_to_array() (simudo.fem.adaptive_stepper.AdaptiveStepper method) is_degenerate_band (simudo.physics.poisson_drift_diffusion.Band attribute) (simudo.physics.poisson_drift_diffusion.IntermediateBand attribute) is_domain (simudo.gui.model.OverlayRegion attribute) is_string_column() (simudo.util.xcsv.XCSVBase method) is_trap_band (simudo.physics.poisson_drift_diffusion.Band attribute) (simudo.physics.poisson_drift_diffusion.IntermediateBand attribute) (simudo.physics.poisson_drift_diffusion.NondegenerateBand attribute) is_ufl_like() (in module simudo.fem.expr) items() (simudo.util.name_dict.NameDict method) iteration (simudo.fem.newton_solver.NewtonSolver attribute) IV_params (class in simudo.example.fourlayer.IV_Analysis) ix_from_vertex() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) iy_from_vertex() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method)

J

json_path (simudo.util.xcsv.XCSVBase attribute) json_path_from_xcsv_path() (simudo.util.xcsv.XCSVBase method)

jv (simudo.example.fourlayer.sweep_extraction.SweepData attribute) jv_curve() (in module simudo.example.fourlayer.fourlayer_example) jv_plot() (in module simudo.example.fourlayer.sweep_extraction)

K

keep_saved_solutions_count (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) key (simudo.gui.batch.BatchTarget attribute) (simudo.gui.panels.mat_ast.PropertyInfo attribute) (simudo.physics.poisson_drift_diffusion.Poisson attribute) KEY_ALIASES (in module simudo.fem.spatial)

keys() (simudo.util.name_dict.NameDict method) kind (simudo.gui.batch.BatchTarget attribute) kl (in module simudo.io.h5yaml) (in module simudo.pyaml.pyaml1) kT (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion property)

L

label (simudo.gui.batch.BatchVariation attribute) label() (in module simudo.gui.panels.shared) LagrangeInterpolator_interpolate_Expression() (in module simudo.fem.extra_bindings) lambert_w0() (in module simudo.fem.ufl_extra) lambert_w0_conditional() (in module simudo.fem.ufl_extra) LambertW0 (class in simudo.fem.ufl_extra) launch() (simudo.gui.runner_backends.DockerBackend method) (simudo.gui.runner_backends.LocalBackend method) (simudo.gui.runner_backends.RunnerBackend method) (simudo.gui.runner_backends.SSHBackend method) (simudo.gui.runner_backends.SSHDockerBackend method) launch_all() (simudo.gui.batch.BatchLauncher method) launch_extractor() (simudo.gui.runner_backends.DockerBackend method) (simudo.gui.runner_backends.LocalBackend method) (simudo.gui.runner_backends.RunnerBackend method) (simudo.gui.runner_backends.SSHBackend method) (simudo.gui.runner_backends.SSHDockerBackend method) Layer (class in simudo.gui.model) layer_names (simudo.gui.model.OverlayRegion attribute) (simudo.gui.model.Project property) layers (simudo.gui.model.Project attribute) (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure attribute) LayersPanel (class in simudo.gui.panels.layers) left (simudo.gui.model.Interface attribute) legend_text_object (simudo.plot.plot.LegendText property) LegendText (class in simudo.plot.plot) line_cut() (simudo.example.fourlayer.sweep_extraction.SpatialXdmf method) line_cut_resolution (simudo.io.output_writer.OutputWriter attribute)

LinearTransform (class in simudo.mesh.construction_helper) LineCutCsvPlot (class in simudo.io.csv) LineCutPlot (class in simudo.fem.ipython) LineCutPlot.RenderingPlot (class in simudo.fem.ipython) LineCutter (class in simudo.fem.plot) list (simudo.util.todo.TODO attribute) Ln1P (class in simudo.fem.ufl_extra) ln1p() (in module simudo.fem.ufl_extra) load() (in module simudo.io.h5yaml) load_batch_spec() (in module simudo.gui.batch) load_from_checkpoint() (simudo.gui.app.SimudoApp method) load_from_xdmf() (simudo.example.fourlayer.sweep_extraction.SpatialXdmf method) load_into() (simudo.io.h5yaml.DolfinObjectTag method) load_json_meta() (simudo.util.xcsv.XCSVReader method) load_pass (simudo.io.h5yaml.DolfinMeshTag attribute) (simudo.io.h5yaml.DolfinObjectTag attribute) load_project() (in module simudo.gui.yaml_io) load_res() (in module simudo.pyaml.load) load_xdmf_checkpoint() (simudo.fem.adaptive_stepper.AdaptiveStepper method) load_yaml() (simudo.gui.app.SimudoApp method) local_edge_length() (simudo.mesh.interval1dtag.CInterval method) (simudo.mesh.interval1dtag.GeometricallyExpandingMeshInterval method) LocalBackend (class in simudo.gui.runner_backends) LockFile (class in simudo.fem.compat.ffc_jit_lock) log_print() (simudo.fem.newton_solver.NewtonSolver method) log_print_new_parameter() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) logfile_formatter (simudo.util.logging.TypicalLoggingSetup attribute) logger (simudo.fem.newton_solver.NewtonSolver attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute)

M

magnitude() (in module simudo.io.xdmf) (simudo.fem.mesh_util.MeshUtil method) main() (in module simudo.example.heterojunction.het1d_example) (in module simudo.example.pn_benchmark.pn_benchmark) (in module simudo.example.pn_benchmark.pn_benchmark_create_submitfiles) (in module simudo.gui.spatial_extractor) (in module simudo.mesh.construction_helper_example) (simudo.mesh.construction_helper.BaseConstructionHelper method) make_1d_mesh_from_points() (in module simudo.mesh.mesh1d) make_cases() (simudo.fem.expr.CellFunctionFunction method) make_combined_bc() (simudo.fem.spatial.Spatial method) make_compatible_sentaurus() (in module simudo.example.pn_benchmark.pn_benchmark_plot) make_coordinates() (simudo.mesh.interval1dtag.BaseInterval1DTag method) make_domain_overlay() (in module simudo.gui.model) make_fs_plot() (in module simudo.example.marti2002.marti2002_plot) make_function() (simudo.fem.function_space.MixedFunctionSpace method) make_interval_1d_mesh() (simudo.mesh.interval1dtag.Interval1DMeshMixin method) make_interval_coordinates() (simudo.mesh.interval1dtag.BaseInterval1DTag method) (simudo.mesh.interval1dtag.MinimumCoordinateDistanceMixin method) make_product2d_mesh() (simudo.mesh.interval1dtag.Product2DMeshMixin method) make_solution_mixed_function() (simudo.fem.function_space.MixedFunctionHelper method) make_string_system() (in module simudo.util.string_system) make_subdomains() (simudo.mesh.domaintag_mshr.DomainTag method) make_test_function() (simudo.fem.function_space.MixedFunctionSpace method) make_tolerance_function() (simudo.fem.function_space.MixedFunctionHelper method) make_unit_registry() (in module simudo.util.pint) map (simudo.fem.spatial.CombinedBoundaryCondition attribute) map() (simudo.fem.delayed_form.DelayedForm method) mapping (simudo.fem.sympy_dolfin_printer.DolfinPrinter attribute) (simudo.util.name_dict.NameDict attribute) mark_boundary_facets() (in module simudo.mesh.facet) mark_using_predicate() (in module simudo.mesh.refine) Material (class in simudo.gui.model) (class in simudo.physics.material) material (simudo.gui.model.Layer attribute) material_name (simudo.gui.panels.mat_ast.ClassInfo attribute) material_to_region (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure attribute) material_to_region_map (simudo.fem.spatial.Spatial property) materials (simudo.gui.model.Project attribute) MaterialsPanel (class in simudo.gui.panels.materials) matplotlib_configure_CM_font() (in module simudo.plot.plot) max_parallel (simudo.gui.batch.BatchSpec attribute) MaxEdgeLengthCellPredicate (class in simudo.mesh.mesh_entity_predicate) mesh (simudo.fem.function_space.MixedFunctionHelper property) (simudo.fem.mesh_util.MeshUtil property) (simudo.gui.model.Layer attribute) (simudo.mesh.interval1dtag.Interval1DMesh attribute) (simudo.mesh.interval1dtag.Interval1DMeshMixin.Interval1DMesh attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) mesh_bbox() (in module simudo.fem.expr) mesh_data (simudo.fem.spatial.CombinedBoundaryCondition property) (simudo.fem.spatial.Spatial property) (simudo.mesh.construction_helper.BaseConstructionHelper attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin property) mesh_dimension (simudo.gui.model.Project attribute) (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh attribute) mesh_direction (simudo.physics.optical.OpticalField property) mesh_function_map() (in module simudo.mesh.facet) mesh_max_edge_length (simudo.gui.model.Project attribute) mesh_unit (simudo.fem.mesh_util.MeshUtil property) mesh_util (simudo.fem.spatial.Spatial property) (simudo.physics.electro_optical_process.ElectroOpticalProcess property) (simudo.physics.optical.OpticalField property) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin attribute) MeshData (class in simudo.fem.mesh_data) meshfunction_type_name (simudo.io.h5yaml.DolfinMeshFunctionBoolTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionDoubleTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionIntTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionSizetTag attribute) MeshParams (class in simudo.gui.model) MeshUtil (class in simudo.fem.mesh_util) meta (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) meta_extractors (simudo.io.output_writer.OutputWriter attribute) MetaCSVWriter (class in simudo.io.output_writer) MetaExtractorBandInfo (class in simudo.io.output_writer) MetaExtractorIntegrals (class in simudo.io.output_writer) minimum_coordinate_distance (simudo.mesh.interval1dtag.MinimumCoordinateDistanceMixin attribute) MinimumCoordinateDistanceMixin (class in simudo.mesh.interval1dtag) mixed_function_helper (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) mixed_function_solution_object (simudo.physics.optical.OpticalField property) mixed_function_space (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion property) MixedDensityNondegenerateBand (class in simudo.physics.poisson_drift_diffusion) MixedFunctionHelper (class in simudo.fem.function_space) MixedFunctionSpace (class in simudo.fem.function_space) MixedFunctionSpace.MixedFunction (class in simudo.fem.function_space) MixedFunctionSpace.MixedTestFunction (class in simudo.fem.function_space) MixedPoisson (class in simudo.physics.poisson_drift_diffusion) mixedqfl_base_w (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_debug_fill_from_boundary (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_debug_fill_thresholds (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_debug_fill_with_zero_except_bc (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_debug_quad_degree_g (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_debug_quad_degree_super (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_debug_use_bchack (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_drift_diffusion_heterojunction_bc_term (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_drift_diffusion_heterojunction_facet_region (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) mixedqfl_drift_diffusion_jump_dS (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin property) mixedqfl_surface_recombination_term (simudo.physics.poisson_drift_diffusion.MixedQflBandMixin attribute) MixedQflBandMixin (class in simudo.physics.poisson_drift_diffusion) MixedQflIntermediateBand (class in simudo.physics.poisson_drift_diffusion) MixedQflNondegenerateBand (class in simudo.physics.poisson_drift_diffusion) mkdirp() (in module simudo.util.os) mobility_bowing() (simudo.materials.helpers.Alloy method) mode (simudo.gui.batch.BatchSpec attribute) module simudo.example.fourlayer.fourlayer simudo.example.fourlayer.fourlayer_example simudo.example.fourlayer.IV_Analysis simudo.example.fourlayer.sweep_extraction simudo.example.heterojunction.germanium simudo.example.heterojunction.het1d_example simudo.example.heterojunction.silicon simudo.example.heterojunction.silicongermanium simudo.example.marti2002.colors simudo.example.marti2002.marti2002 simudo.example.marti2002.marti2002_plot simudo.example.pn_benchmark.pn_benchmark simudo.example.pn_benchmark.pn_benchmark_create_submitfiles simudo.example.pn_benchmark.pn_benchmark_plot simudo.example.pn_diode.pn_diode simudo.example.pn_diode.pn_diode_plot simudo.fem.adaptive_stepper simudo.fem.assign simudo.fem.compat simudo.fem.compat.ffc_includes simudo.fem.compat.ffc_jit_lock simudo.fem.compat.ufl_classes_update simudo.fem.delayed_form simudo.fem.dolfin_parameters simudo.fem.expr simudo.fem.extra_bindings simudo.fem.ffc_jit_lock simudo.fem.function_space simudo.fem.function_space_cache simudo.fem.function_subspace_registry simudo.fem.ipython simudo.fem.mesh_data simudo.fem.mesh_util simudo.fem.newton_solver simudo.fem.offset_partitioning simudo.fem.plot simudo.fem.spatial simudo.fem.sympy_dolfin_printer simudo.fem.ufl_extra simudo.gui simudo.gui.app simudo.gui.batch simudo.gui.fourlayer_reference simudo.gui.model simudo.gui.panels simudo.gui.panels.bands simudo.gui.panels.bcs simudo.gui.panels.layers simudo.gui.panels.mat_ast simudo.gui.panels.materials simudo.gui.panels.opt_fields simudo.gui.panels.output simudo.gui.panels.processes simudo.gui.panels.shared simudo.gui.panels.simulation simudo.gui.panels.stub simudo.gui.runner_backends simudo.gui.simudo_1d_runner simudo.gui.spatial_extractor simudo.gui.yaml_io simudo.io.csv simudo.io.h5yaml simudo.io.output_writer simudo.io.xdmf simudo.materials simudo.materials.alloy_optics simudo.materials.aluminumarsenide simudo.materials.aluminumgalliumarsenide simudo.materials.galliumarsenide simudo.materials.galliumarsenidenitride simudo.materials.galliumnitride simudo.materials.germanium simudo.materials.helpers simudo.materials.ib_test_material simudo.materials.indiumaluminumarsenide simudo.materials.indiumarsenide simudo.materials.silicon simudo.materials.silicongermanium simudo.matplotlib_backend simudo.mesh.construction_helper simudo.mesh.construction_helper_example simudo.mesh.domaintag_mshr simudo.mesh.facet simudo.mesh.interval1dtag simudo.mesh.mesh1d simudo.mesh.mesh_entity_predicate simudo.mesh.product2d simudo.mesh.pygmsh simudo.mesh.refine simudo.physics.electro_optical_process simudo.physics.heterojunction simudo.physics.material simudo.physics.optical simudo.physics.poisson_drift_diffusion simudo.physics.problem_data simudo.physics.problem_data_child simudo.physics.steppers simudo.plot.matplotlib simudo.plot.pdftoppm simudo.plot.plot simudo.plot.postprocessing simudo.pyaml.astglobals simudo.pyaml.helper simudo.pyaml.load simudo.pyaml.multidict simudo.pyaml.pyaml1 simudo.util.attrproxy simudo.util.base32_token simudo.util.blackbody simudo.util.cartesian_product simudo.util.latex simudo.util.logging simudo.util.name_dict simudo.util.os simudo.util.pint simudo.util.raise_from simudo.util.raise_from_py3 simudo.util.setattr_init_mixin simudo.util.string_system simudo.util.todo simudo.util.with_default_kwargs simudo.util.xcsv simudo.util.xtimeit

mpp_row (simudo.example.fourlayer.sweep_extraction.SweepData attribute) mshr_make_subdomains() (simudo.mesh.domaintag_mshr.MshrDomainTag method) MshrDomainTag (class in simudo.mesh.domaintag_mshr) multidict_items() (in module simudo.pyaml.multidict) multiplex_setup() (in module simudo.example.fourlayer.fourlayer) mumps_icntl (simudo.fem.newton_solver.NewtonSolution attribute)

N

N_bins (simudo.gui.model.OpticalFieldSet attribute) N_eff (simudo.physics.heterojunction.ThermionicHeterojunction property) name (simudo.example.heterojunction.germanium.GermaniumMaterial attribute) (simudo.example.heterojunction.silicon.SiliconMaterial attribute) (simudo.example.heterojunction.silicongermanium.SiliconGermaniumAlloy attribute) (simudo.example.marti2002.marti2002.IBSemiconductor attribute) (simudo.example.marti2002.marti2002.PFrontSurfaceField attribute) (simudo.example.marti2002.marti2002.Semiconductor attribute) (simudo.example.pn_benchmark.pn_benchmark.SentaurusComparisonSilicon attribute) (simudo.example.pn_benchmark.pn_benchmark.SimpleSiliconMaterial attribute) (simudo.gui.model.Band attribute) (simudo.gui.model.Layer attribute) (simudo.gui.model.Material attribute) (simudo.gui.model.OpticalField attribute) (simudo.gui.model.OverlayRegion attribute) (simudo.gui.model.Process attribute) (simudo.materials.aluminumarsenide.AluminumArsenideMaterial attribute) (simudo.materials.aluminumgalliumarsenide.AluminumGalliumArsenideAlloy attribute) (simudo.materials.galliumarsenide.GalliumArsenideMaterial attribute) (simudo.materials.galliumarsenidenitride.GalliumArsenideNitrideAlloy attribute) (simudo.materials.galliumnitride.GalliumNitrideMaterial attribute) (simudo.materials.germanium.GermaniumMaterial attribute) (simudo.materials.ib_test_material.IBTestMaterial attribute) (simudo.materials.indiumaluminumarsenide.IndiumAluminumArsenideAlloy attribute) (simudo.materials.indiumarsenide.IndiumArsenideMaterial attribute) (simudo.materials.silicon.SiliconMaterial attribute) (simudo.materials.silicongermanium.SiliconGermaniumAlloy attribute) (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB attribute) (simudo.physics.electro_optical_process.NonRadiativeTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) (simudo.physics.electro_optical_process.StaticGeneration attribute) (simudo.physics.material.BadSimpleSiliconMaterial attribute) (simudo.physics.material.Material attribute) (simudo.physics.material.SimpleSiliconMaterial attribute) (simudo.physics.optical.OpticalField property) (simudo.physics.poisson_drift_diffusion.Band property) (simudo.physics.poisson_drift_diffusion.SaveItem attribute)

name_prefix (simudo.gui.model.OpticalFieldSet attribute) NameDict (class in simudo.util.name_dict) NameLevelFilter (class in simudo.util.logging) NandMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) nargs (simudo.fem.sympy_dolfin_printer.DolfinConstant attribute) needs_load_into (simudo.io.h5yaml.DolfinObjectTag attribute) new() (simudo.io.csv.LineCutCsvPlot method) (simudo.io.xdmf.XdmfPlot method) new_independent_function() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) new_jit() (in module simudo.fem.compat.ffc_jit_lock) new_project() (simudo.gui.app.SimudoApp method) NewtonBailoutException NewtonSolution (class in simudo.fem.newton_solver) NewtonSolver (class in simudo.fem.newton_solver) NewtonSolverLogDamping (class in simudo.fem.newton_solver) NewtonSolverMaxDu (class in simudo.fem.newton_solver) non_overlapping_energy_ranges() (simudo.util.blackbody.Blackbody method) NondegenerateBand (class in simudo.physics.poisson_drift_diffusion) NonequilibriumCoupledConstantStepper (class in simudo.physics.steppers) NonequilibriumCoupledStepper (class in simudo.physics.steppers) NonOverlappingTopHatBeerLambert (class in simudo.physics.electro_optical_process) NonOverlappingTopHatBeerLambertIB (class in simudo.physics.electro_optical_process) NonRadiativeTrap (class in simudo.physics.electro_optical_process) notify_run_output_dir() (simudo.gui.app.SimudoApp method) null() (simudo.mesh.topology.CellRegion static method) (simudo.mesh.topology.FacetRegion static method) nX (simudo.mesh.interval1dtag.Interval1DMesh attribute) (simudo.mesh.interval1dtag.Interval1DMeshMixin.Interval1DMesh attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) nY (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute)

O

obj_eq() (simudo.util.name_dict.NameDict method) obj_to_key() (simudo.util.name_dict.NameDict method) offset_partitioning_bc_cells (simudo.fem.spatial.CombinedBoundaryCondition attribute) open() (simudo.io.h5yaml.DolfinH5Manager method) opportunistic_assign() (in module simudo.fem.assign) OptFieldsPanel (class in simudo.gui.panels.opt_fields) Optical (class in simudo.physics.optical) optical (simudo.physics.problem_data.ProblemData attribute) optical_field_sets (simudo.gui.model.Project attribute) optical_fields (simudo.gui.model.Project attribute) optical_properties_table() (simudo.example.heterojunction.silicon.SiliconMaterial method) (simudo.materials.alloy_optics.OpticsInterpolator method) (simudo.materials.aluminumarsenide.AluminumArsenideMaterial method) (simudo.materials.galliumarsenide.GalliumArsenideMaterial method) (simudo.materials.galliumnitride.GalliumNitrideMaterial method) (simudo.materials.indiumarsenide.IndiumArsenideMaterial method) (simudo.materials.silicon.SiliconMaterial method) OpticalField (class in simudo.gui.model) (class in simudo.physics.optical)

OpticalFieldMSORTE (class in simudo.physics.optical) OpticalFieldSet (class in simudo.gui.model) OpticalIntensityAdaptiveStepper (class in simudo.physics.steppers) OpticalIntensityLogDampStepper (class in simudo.physics.steppers) OpticsInterpolator (class in simudo.materials.alloy_optics) optimizer() (in module simudo.example.fourlayer.fourlayer_example) OrMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) out_function (simudo.fem.offset_partitioning.PartitionOffsets attribute) outdir_path_helper() (in module simudo.util.os) output (simudo.gui.model.SimulationSettings attribute) output_folder (simudo.gui.model.Project attribute) output_writer (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) OutputPanel (class in simudo.gui.panels.output) OutputSettings (class in simudo.gui.model) OutputWriter (class in simudo.io.output_writer) overlay_regions (simudo.gui.model.Project attribute) OverlayRegion (class in simudo.gui.model)

P

p (simudo.mesh.construction_helper.BaseConstructionHelper attribute) parameter (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) parameter_name (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.io.output_writer.OutputWriter attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) parameter_start_value (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) parameter_target_values (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) parameter_unit (simudo.fem.adaptive_stepper.ConstantStepperMixin attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) params (simudo.example.fourlayer.sweep_extraction.SweepData attribute) parse_kv() (in module simudo.util.os) parse_quantity() (in module simudo.gui.simudo_1d_runner) parse_spatial_quantity() (in module simudo.gui.simudo_1d_runner) PartitionOffsets (class in simudo.fem.offset_partitioning) pdd (simudo.io.output_writer.MetaExtractorIntegrals attribute) (simudo.physics.material.Material property) (simudo.physics.optical.OpticalField property) (simudo.physics.problem_data.ProblemData attribute) pdftoppm() (in module simudo.plot.pdftoppm) percentile_update_limits() (in module simudo.plot.plot) periodic_sync_interval (simudo.gui.runner_backends.RunHandle attribute) (simudo.gui.runner_backends.SSHRunHandle attribute) permittivity (simudo.physics.poisson_drift_diffusion.Poisson property) PFrontSurfaceField (class in simudo.example.marti2002.marti2002) Phi_pddproj (simudo.physics.optical.OpticalField attribute) Phi_pddproj_clipped (simudo.physics.optical.OpticalField property) Phi_pddproj_space (simudo.physics.optical.Optical attribute) Phi_scale (simudo.physics.optical.Optical attribute) phiqfl (simudo.physics.poisson_drift_diffusion.Band property) phiqfl_to_u() (simudo.physics.poisson_drift_diffusion.Band method) photon_energy (simudo.gui.model.OpticalField attribute) photon_energy_unit (simudo.gui.model.OpticalField attribute) photon_flux_integral() (simudo.util.blackbody.Blackbody method) photon_flux_integral_on_earth() (simudo.util.blackbody.Blackbody method) physics (simudo.gui.model.Project attribute) PhysicsSettings (class in simudo.gui.model) PintQTag (class in simudo.io.h5yaml) plot01() (in module simudo.plot.plot) plot_1d (simudo.io.output_writer.OutputWriter attribute) plot_bands() (in module simudo.example.marti2002.marti2002_plot) plot_cmp_current() (in module simudo.example.pn_benchmark.pn_benchmark_plot) plot_cmp_density() (in module simudo.example.pn_benchmark.pn_benchmark_plot) plot_current() (in module simudo.example.marti2002.marti2002_plot) plot_detail_j() (in module simudo.example.marti2002.marti2002_plot) plot_detail_j_subplot() (in module simudo.example.marti2002.marti2002_plot) plot_drift_diffusion_currents() (in module simudo.example.pn_benchmark.pn_benchmark_plot) plot_du (simudo.io.output_writer.OutputWriter attribute) plot_fs() (in module simudo.example.marti2002.marti2002_plot) plot_g() (in module simudo.example.marti2002.marti2002_plot) plot_iv (simudo.io.output_writer.OutputWriter attribute) plot_jv() (in module simudo.example.marti2002.marti2002_plot) plot_jv_old() (in module simudo.example.marti2002.marti2002_plot) plot_main() (in module simudo.example.marti2002.marti2002_plot) plot_mesh (simudo.io.output_writer.OutputWriter attribute) plot_mesh_full (simudo.io.output_writer.OutputWriter attribute) plot_offset_partitioning() (in module simudo.example.pn_benchmark.pn_benchmark_plot) plot_Phi() (in module simudo.example.marti2002.marti2002_plot)

plot_qfl() (in module simudo.example.marti2002.marti2002_plot) plot_subcurrents() (in module simudo.example.marti2002.marti2002_plot) PlotAddMixin (class in simudo.io.xdmf) plotobj (simudo.fem.ipython.LineCutPlot.RenderingPlot attribute) point_to_array() (in module simudo.fem.expr) Poisson (class in simudo.physics.poisson_drift_diffusion) poisson (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) PoissonDriftDiffusion (class in simudo.physics.poisson_drift_diffusion) post_iteration_hook (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) powerset() (in module simudo.mesh.domaintag_mshr) pre_first_iteration_hook (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) pre_first_iteration_hook() (simudo.physics.electro_optical_process.BeerLambert method) (simudo.physics.electro_optical_process.IBBeerLambert method) pre_iteration_hook (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) pre_iteration_hook() (simudo.physics.electro_optical_process.BeerLambert method) predicate_to_meshfunction() (in module simudo.mesh.refine) prefix (simudo.io.output_writer.MetaExtractorBandInfo attribute) (simudo.io.output_writer.MetaExtractorIntegrals attribute) prepare() (simudo.mesh.mesh_entity_predicate.BaseMeshEntityPredicate method) (simudo.mesh.mesh_entity_predicate.CombiningMeshEntityPredicate method) (simudo.mesh.mesh_entity_predicate.DimensionAdapterPredicate method) (simudo.mesh.mesh_entity_predicate.DirectionalEdgeLengthPredicate method) printmethod (simudo.fem.sympy_dolfin_printer.DolfinPrinter attribute) prior_solutions (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) prior_solutions_idx_saved_solution (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) prior_solutions_idx_successful (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) problem() (simudo.gui.simudo_1d_runner.ProblemBuilder method) ProblemBuilder (class in simudo.gui.simudo_1d_runner) ProblemData (class in simudo.physics.problem_data) Process (class in simudo.gui.model) process() (simudo.mesh.pygmsh.PygmshMakeRegions method) (simudo.pyaml.pyaml1.CodeGenerator method) process_class() (simudo.pyaml.pyaml1.CodeGenerator method) process_code() (simudo.pyaml.pyaml1.CodeGenerator method) process_eval() (simudo.pyaml.pyaml1.CodeGenerator method) process_string_column() (simudo.util.xcsv.XCSVReader method) processes (simudo.gui.model.Project attribute) ProcessesPanel (class in simudo.gui.panels.processes) product2d_mesh (simudo.mesh.interval1dtag.Product2DMeshMixin attribute) product2d_Ys (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin attribute) Product2DMesh (class in simudo.mesh.product2d) Product2DMeshMixin (class in simudo.mesh.interval1dtag) Product2DMeshMixin.Product2DMesh (class in simudo.mesh.interval1dtag) Project (class in simudo.gui.model) project (simudo.gui.panels.layers.LayersPanel property) project_to_dict() (in module simudo.gui.yaml_io) properties (simudo.gui.model.Layer attribute) (simudo.gui.model.Material attribute) (simudo.gui.model.OverlayRegion attribute) (simudo.gui.panels.mat_ast.ClassInfo attribute) PropertyInfo (class in simudo.gui.panels.mat_ast) PYAML_EVAL() (simudo.pyaml.helper.PyamlGetAttr method) PYAML_get_direct_env() (simudo.pyaml.helper.PyamlEnv method) PYAML_get_env() (simudo.pyaml.helper.PyamlEnv method) pyaml_to_python() (simudo.pyaml.pyaml1.CodeGenerator class method) PyamlBase (class in simudo.pyaml.helper) PyamlEnv (class in simudo.pyaml.helper) PyamlGetAttr (class in simudo.pyaml.helper) PygmshMakeRegions (class in simudo.mesh.pygmsh) python_cmd (simudo.gui.model.ExecutionProfile attribute)

Q

q (simudo.fem.newton_solver.NewtonSolution attribute)

qfl_to_u() (simudo.physics.poisson_drift_diffusion.Band method)

R

radiative_recombination (simudo.gui.model.Process attribute) RadiativeEOPMixin (class in simudo.physics.electro_optical_process) raise_from() (in module simudo.util.raise_from) read_checkpoint_metadata() (in module simudo.gui.panels.shared) read_csv() (simudo.util.xcsv.XCSV class method) (simudo.util.xcsv.XCSVReader method) read_xcsv() (in module simudo.util.xcsv) reader_class (simudo.util.xcsv.XCSV attribute) rebuild() (simudo.gui.panels.layers.LayersPanel method) rect() (simudo.mesh.domaintag_mshr.DomainTagTest method) refine_forever() (in module simudo.mesh.refine) refine_subdomains() (simudo.mesh.construction_helper.BaseConstructionHelper method) refresh() (simudo.gui.panels.output.OutputPanel method) refresh_layers_missing_params() (simudo.gui.app.SimudoApp method) refresh_layers_panel() (simudo.gui.app.SimudoApp method) refresh_output_panel() (simudo.gui.app.SimudoApp method) reg_band (simudo.physics.electro_optical_process.TrapEOPMixin attribute) region (simudo.gui.model.CallableTopHat attribute) region_ds_and_dS() (simudo.fem.mesh_util.MeshUtil method) region_dx() (simudo.fem.mesh_util.MeshUtil method) region_oriented_dS() (simudo.fem.mesh_util.MeshUtil method) region_to_subdomain() (simudo.mesh.domaintag_mshr.DomainTag method) register() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) (simudo.physics.heterojunction.ThermionicHeterojunction method) (simudo.physics.material.Material method) register_in_dumper() (simudo.io.h5yaml.BaseCustomTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) register_in_loader() (simudo.io.h5yaml.BaseCustomTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) rel_du_norm (simudo.fem.newton_solver.NewtonSolution attribute) release() (simudo.fem.compat.ffc_jit_lock.LockFile method) (simudo.fem.sympy_dolfin_printer.DolfinConstant class method) release_linear_solver() (simudo.fem.newton_solver.NewtonSolution method) replace() (simudo.util.name_dict.NameDict method) require_natural (simudo.fem.spatial.BoundaryCondition attribute)

required_spatial_callables (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) required_spatial_params (simudo.materials.aluminumgalliumarsenide.AluminumGalliumArsenideAlloy attribute) (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB attribute) (simudo.physics.electro_optical_process.NonRadiativeTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) (simudo.physics.material.Material attribute) reset_parameter_to_last_successful() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) result (simudo.pyaml.pyaml1.CodeGenerator attribute) resume_from (simudo.gui.model.SimulationSettings attribute) returncode (simudo.gui.runner_backends.ExtractorHandle property) (simudo.gui.runner_backends.RunHandle property) reverse_map (simudo.fem.spatial.CombinedBoundaryCondition attribute) right (simudo.gui.model.Interface attribute) robjs (simudo.mesh.construction_helper.BaseConstructionHelper attribute) role (simudo.gui.model.Contact attribute) row_gap() (in module simudo.gui.panels.shared) run() (in module simudo.example.fourlayer.fourlayer) (in module simudo.example.marti2002.marti2002) (in module simudo.example.pn_diode.pn_diode) (in module simudo.gui.simudo_1d_runner) (simudo.mesh.construction_helper.BaseConstructionHelper method) run_count() (simudo.gui.batch.BatchSpec method) run_optics (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) run_reference() (in module simudo.gui.fourlayer_reference) RunHandle (class in simudo.gui.runner_backends) RunnerBackend (class in simudo.gui.runner_backends)

S

save_batch_spec() (in module simudo.gui.batch) save_execution_profile_for_type() (simudo.gui.app.SimudoApp method) save_project() (in module simudo.gui.yaml_io) save_yaml() (simudo.gui.app.SimudoApp method) savefig() (in module simudo.plot.plot) SaveItem (class in simudo.physics.poisson_drift_diffusion) scalar_function_to_Expression() (in module simudo.fem.expr) ScaleDolfinObjectTag (class in simudo.io.h5yaml) ScaleMixin (class in simudo.io.h5yaml) scan_checkpoint_dir() (in module simudo.gui.panels.shared) scan_library_dirs() (in module simudo.gui.panels.mat_ast) sci_to_latex() (in module simudo.example.pn_benchmark.pn_benchmark_plot) sci_to_latex1() (in module simudo.util.latex) sec_header() (in module simudo.gui.panels.shared) selfconsistent_optics (simudo.gui.model.IntensityRampSettings attribute) (simudo.gui.model.VoltageSweepSettings attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) Semiconductor (class in simudo.example.marti2002.marti2002) SentaurusComparisonSilicon (class in simudo.example.pn_benchmark.pn_benchmark) set_actual_output_dir() (simudo.gui.panels.simulation.SimulationPanel method) set_default_execution_profile() (simudo.gui.app.SimudoApp method) set_folder() (simudo.gui.panels.output.OutputPanel method) set_last_run_output_dir() (simudo.gui.app.SimudoApp method) set_problem() (simudo.fem.newton_solver.NewtonSolver method) set_user_lib_dir() (simudo.gui.app.SimudoApp method) SetattrInitMixin (class in simudo.util.setattr_init_mixin) setup() (simudo.util.logging.TypicalLoggingSetup method) setup_dolfin_loglevel() (simudo.util.logging.TypicalLoggingSetup method) setup_dolfin_parameters() (in module simudo.fem.dolfin_parameters) setup_filters() (simudo.util.logging.TypicalLoggingSetup method) setup_handlers() (simudo.util.logging.TypicalLoggingSetup method) setup_logging() (simudo.util.logging.TypicalLoggingSetup method) setup_warnings() (simudo.util.logging.TypicalLoggingSetup method) ShockleyReadBand2BandTrap (class in simudo.physics.electro_optical_process) ShockleyReadTrap2Trap (class in simudo.physics.electro_optical_process) shortcircuitbanddiagram() (in module simudo.example.fourlayer.fourlayer_example) should_extract (simudo.fem.spatial.BoundaryCondition attribute) should_stop() (simudo.fem.newton_solver.NewtonSolver method) should_stop_real() (simudo.fem.newton_solver.NewtonSolver method) show_error() (simudo.gui.app.SimudoApp method) sidecar_path() (in module simudo.gui.batch) sign (simudo.gui.model.Band attribute) SiliconGermaniumAlloy (class in simudo.example.heterojunction.silicongermanium) (class in simudo.materials.silicongermanium) SiliconMaterial (class in simudo.example.heterojunction.silicon) (class in simudo.materials.silicon) SimpleSiliconMaterial (class in simudo.example.pn_benchmark.pn_benchmark) (class in simudo.physics.material) simudo.example.fourlayer.fourlayer module simudo.example.fourlayer.fourlayer_example module simudo.example.fourlayer.IV_Analysis module simudo.example.fourlayer.sweep_extraction module simudo.example.heterojunction.germanium module simudo.example.heterojunction.het1d_example module simudo.example.heterojunction.silicon module simudo.example.heterojunction.silicongermanium module simudo.example.marti2002.colors module simudo.example.marti2002.marti2002 module simudo.example.marti2002.marti2002_plot module simudo.example.pn_benchmark.pn_benchmark module simudo.example.pn_benchmark.pn_benchmark_create_submitfiles module simudo.example.pn_benchmark.pn_benchmark_plot module simudo.example.pn_diode.pn_diode module simudo.example.pn_diode.pn_diode_plot module simudo.fem.adaptive_stepper module simudo.fem.assign module simudo.fem.compat module simudo.fem.compat.ffc_includes module simudo.fem.compat.ffc_jit_lock module simudo.fem.compat.ufl_classes_update module simudo.fem.delayed_form module simudo.fem.dolfin_parameters module simudo.fem.expr module simudo.fem.extra_bindings module simudo.fem.ffc_jit_lock module simudo.fem.function_space module simudo.fem.function_space_cache module simudo.fem.function_subspace_registry module simudo.fem.ipython module simudo.fem.mesh_data module simudo.fem.mesh_util module simudo.fem.newton_solver module simudo.fem.offset_partitioning module simudo.fem.plot module simudo.fem.spatial module simudo.fem.sympy_dolfin_printer module simudo.fem.ufl_extra module simudo.gui module simudo.gui.app module simudo.gui.batch module simudo.gui.fourlayer_reference module simudo.gui.model module simudo.gui.panels module simudo.gui.panels.bands module simudo.gui.panels.bcs module simudo.gui.panels.layers module simudo.gui.panels.mat_ast module simudo.gui.panels.materials module simudo.gui.panels.opt_fields module simudo.gui.panels.output module simudo.gui.panels.processes module simudo.gui.panels.shared module simudo.gui.panels.simulation module simudo.gui.panels.stub module simudo.gui.runner_backends module simudo.gui.simudo_1d_runner module simudo.gui.spatial_extractor module simudo.gui.yaml_io module simudo.io.csv module simudo.io.h5yaml module simudo.io.output_writer module simudo.io.xdmf module simudo.materials module simudo.materials.alloy_optics module simudo.materials.aluminumarsenide module simudo.materials.aluminumgalliumarsenide module simudo.materials.galliumarsenide module simudo.materials.galliumarsenidenitride module simudo.materials.galliumnitride module simudo.materials.germanium module simudo.materials.helpers module simudo.materials.ib_test_material module simudo.materials.indiumaluminumarsenide module simudo.materials.indiumarsenide module simudo.materials.silicon module

simudo.materials.silicongermanium module simudo.matplotlib_backend module simudo.mesh.construction_helper module simudo.mesh.construction_helper_example module simudo.mesh.domaintag_mshr module simudo.mesh.facet module simudo.mesh.interval1dtag module simudo.mesh.mesh1d module simudo.mesh.mesh_entity_predicate module simudo.mesh.product2d module simudo.mesh.pygmsh module simudo.mesh.refine module simudo.physics.electro_optical_process module simudo.physics.heterojunction module simudo.physics.material module simudo.physics.optical module simudo.physics.poisson_drift_diffusion module simudo.physics.problem_data module simudo.physics.problem_data_child module simudo.physics.steppers module simudo.plot.matplotlib module simudo.plot.pdftoppm module simudo.plot.plot module simudo.plot.postprocessing module simudo.pyaml.astglobals module simudo.pyaml.helper module simudo.pyaml.load module simudo.pyaml.multidict module simudo.pyaml.pyaml1 module simudo.util.attrproxy module simudo.util.base32_token module simudo.util.blackbody module simudo.util.cartesian_product module simudo.util.latex module simudo.util.logging module simudo.util.name_dict module simudo.util.os module simudo.util.pint module simudo.util.raise_from module simudo.util.raise_from_py3 module simudo.util.setattr_init_mixin module simudo.util.string_system module simudo.util.todo module simudo.util.with_default_kwargs module simudo.util.xcsv module simudo.util.xtimeit module simudo_multiplexer() (in module simudo.example.fourlayer.fourlayer_example) SimudoApp (class in simudo.gui.app) simulation (simudo.gui.model.Project attribute) SimulationPanel (class in simudo.gui.panels.simulation) SimulationSettings (class in simudo.gui.model) size (simudo.fem.ipython.LineCutPlot.RenderingPlot attribute) (simudo.fem.newton_solver.NewtonSolution attribute) solution (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) solution_class (simudo.fem.newton_solver.NewtonSolver attribute) solution_function (simudo.fem.function_space.MixedFunctionHelper property) solution_mixed_function_data (simudo.fem.function_space.MixedFunctionHelper attribute) solution_mixed_space (simudo.fem.function_space.MixedFunctionHelper attribute) solution_plot() (in module simudo.io.output_writer) solution_subspace_descriptors (simudo.fem.function_space.WithSubfunctionsMixin property) solution_test_function (simudo.fem.function_space.MixedFunctionHelper property) SolutionIOTest (class in simudo.io.h5yaml) solve() (simudo.fem.newton_solver.NewtonSolver method) solver_class (simudo.physics.steppers.NonequilibriumCoupledStepper attribute) (simudo.physics.steppers.OpticalIntensityLogDampStepper attribute) solver_parameters (simudo.physics.steppers.NonequilibriumCoupledStepper attribute) solver_save (simudo.physics.poisson_drift_diffusion.SaveItem attribute) source (simudo.gui.model.Material attribute) space (simudo.fem.mesh_util.MeshUtil property) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) Spatial (class in simudo.fem.spatial) spatial (simudo.physics.optical.Optical attribute) (simudo.physics.optical.OpticalField property) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) spatial_data() (simudo.example.fourlayer.sweep_extraction.SweepData method) spatial_profiles (simudo.gui.model.OutputSettings attribute) SpatialXdmf (class in simudo.example.fourlayer.sweep_extraction) spectrum (simudo.gui.model.OpticalFieldSet attribute) split() (simudo.fem.function_space.MixedFunctionSpace method) src_band (simudo.gui.model.Process attribute) src_band_is_trap (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert attribute) (simudo.physics.electro_optical_process.ShockleyReadBand2BandTrap attribute) (simudo.physics.electro_optical_process.ShockleyReadTrap2Trap attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) SRHRecombination (class in simudo.physics.electro_optical_process) ssh_delete_remote_after_sync (simudo.gui.model.ExecutionProfile attribute) ssh_host (simudo.gui.model.ExecutionProfile attribute) ssh_identity_file (simudo.gui.model.ExecutionProfile attribute) ssh_remote_work_dir (simudo.gui.model.ExecutionProfile attribute) ssh_simudo_path (simudo.gui.model.ExecutionProfile attribute) ssh_user (simudo.gui.model.ExecutionProfile attribute) SSHBackend (class in simudo.gui.runner_backends) SSHDockerBackend (class in simudo.gui.runner_backends) SSHExtractorHandle (class in simudo.gui.runner_backends) SSHRunHandle (class in simudo.gui.runner_backends) standard_outdir() (in module simudo.gui.simudo_1d_runner) start (simudo.gui.model.MeshParams attribute) (simudo.gui.model.OverlayRegion attribute) StaticGeneration (class in simudo.physics.electro_optical_process) stderr_text() (simudo.gui.runner_backends.ExtractorHandle method) stdout_lines() (simudo.gui.runner_backends.ExtractorHandle method) (simudo.gui.runner_backends.RunHandle method) (simudo.gui.runner_backends.SSHExtractorHandle method) step_size (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.gui.model.IntensityRampSettings attribute) (simudo.gui.model.VoltageSweepSettings attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) stepper (simudo.io.output_writer.OutputWriter attribute) stepper_rel_tol (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) StepperError stop() (simudo.gui.batch.BatchLauncher method) (simudo.gui.runner_backends.ExtractorHandle method) (simudo.gui.runner_backends.RunHandle method) str_error() (simudo.fem.newton_solver.NewtonSolution method) stream_console (simudo.util.logging.TypicalLoggingSetup attribute) stream_debug (simudo.util.logging.TypicalLoggingSetup attribute) stream_info (simudo.util.logging.TypicalLoggingSetup attribute) string (simudo.plot.plot.BaseText attribute) (simudo.plot.plot.LegendText property) (simudo.plot.plot.TitleText property) string_columns (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) string_prefix (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter property) string_prefix_re (simudo.util.xcsv.XCSVReader attribute) StubPanel (class in simudo.gui.panels.stub) subdomain_internal_facets() (simudo.mesh.topology.CellRegion method) SubdomainCellPredicate (class in simudo.mesh.mesh_entity_predicate) subdomains (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) subfunction_prefix() (simudo.fem.function_space.WithSubfunctionsMixin method) subfunctions_info (simudo.physics.poisson_drift_diffusion.Band attribute) subgap_generation_mismatch_diagram() (in module simudo.example.fourlayer.sweep_extraction) subgap_mismatch() (in module simudo.example.fourlayer.sweep_extraction) submain() (in module simudo.example.pn_benchmark.pn_benchmark) submitfile_to_title() (in module simudo.example.marti2002.marti2002) subplots() (in module simudo.plot.plot) subspace_descriptors_dict (simudo.fem.function_space.MixedFunctionSpace attribute) summary_analysis() (in module simudo.example.pn_benchmark.pn_benchmark_plot) svr_E_max (simudo.gui.model.Process attribute) (simudo.physics.electro_optical_process.BeerLambert attribute) svr_E_max_unit (simudo.gui.model.Process attribute) svr_E_min (simudo.gui.model.Process attribute) (simudo.physics.electro_optical_process.BeerLambert attribute) svr_E_min_unit (simudo.gui.model.Process attribute) svr_integration_bins (simudo.physics.electro_optical_process.BeerLambert attribute) svr_solid_angle (simudo.physics.electro_optical_process.BeerLambert attribute) svr_static_alpha (simudo.physics.electro_optical_process.BeerLambert attribute) (simudo.physics.electro_optical_process.IBBeerLambert attribute) SweepData (class in simudo.example.fourlayer.sweep_extraction) sympy_to_ufl() (in module simudo.fem.sympy_dolfin_printer) sympy_to_ufl_base() (in module simudo.fem.sympy_dolfin_printer)

T

t_bounds (simudo.fem.plot.LineCutter attribute) T_source (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) T_source_unit (simudo.gui.model.BlackbodyIntensity attribute) (simudo.gui.model.OpticalFieldSet attribute) tag_to_cell_values (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) target (simudo.gui.batch.BatchVariation attribute) temperature (simudo.gui.model.PhysicsSettings attribute) (simudo.physics.material.Material property) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion property) temperature_unit (simudo.gui.model.PhysicsSettings attribute) test_domain_relationship() (simudo.mesh.domaintag_mshr.DomainTagTest method) test_generate_possibilities() (simudo.mesh.domaintag_mshr.DomainTagTest method) test_roundtrip() (simudo.io.h5yaml.SolutionIOTest method) test_roundtrip_with_dedup() (simudo.io.h5yaml.SolutionIOTest method) thermal_equilibrium_phi (simudo.physics.poisson_drift_diffusion.Poisson attribute) thermal_velocity() (in module simudo.materials.helpers) ThermionicHeterojunction (class in simudo.physics.heterojunction) thickness (simudo.gui.model.Layer attribute) thickness_unit (simudo.gui.model.Layer attribute) thresholds (simudo.fem.offset_partitioning.PartitionOffsets attribute) timestamp (simudo.io.csv.LineCutCsvPlot attribute) (simudo.io.xdmf.XdmfPlot attribute) TitleText (class in simudo.plot.plot) to_csv() (simudo.util.xcsv.XCSV class method) (simudo.util.xcsv.XCSVWriter method) to_dict() (simudo.gui.batch.BatchSpec method) (simudo.gui.batch.BatchTarget method) (simudo.gui.batch.BatchVariation method) (simudo.gui.model.ValueUnit method) to_save_objects (simudo.fem.adaptive_stepper.AdaptiveStepper attribute) (simudo.physics.steppers.NonequilibriumCoupledStepper attribute)

to_ufl() (simudo.fem.delayed_form.DelayedForm method) to_xcsv() (in module simudo.util.xcsv) to_yaml() (simudo.io.h5yaml.DolfinObjectTag class method) (simudo.io.h5yaml.FrozenSetTag class method) (simudo.io.h5yaml.PintQTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) TODO (class in simudo.util.todo) topology_standard_contacts() (in module simudo.example.heterojunction.het1d_example) (in module simudo.example.marti2002.marti2002) (in module simudo.example.pn_benchmark.pn_benchmark) (in module simudo.example.pn_diode.pn_diode) total_intensity_on_earth() (simudo.util.blackbody.Blackbody method) transform() (simudo.mesh.construction_helper.InvertibleTransform method) transform_coordinates() (simudo.mesh.construction_helper.InvertibleTransform method) (simudo.mesh.construction_helper.LinearTransform method) translate_output_path() (simudo.gui.runner_backends.DockerRunHandle method) (simudo.gui.runner_backends.RunHandle method) (simudo.gui.runner_backends.SSHRunHandle method) trap_band (simudo.gui.model.Process attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) trap_spatial_get() (simudo.physics.electro_optical_process.TrapEOPMixin method) TrapEnergyLevelMixin (class in simudo.physics.electro_optical_process) TrapEOPMixin (class in simudo.physics.electro_optical_process) truncate (simudo.util.logging.TypicalLoggingSetup attribute) Ts (simudo.fem.plot.DolfinFunctionRenderLineCutFrame attribute) tuple_to_point() (in module simudo.fem.expr) TwoBandEOPMixin (class in simudo.physics.electro_optical_process) type (simudo.gui.model.Band attribute) (simudo.gui.model.ExecutionProfile attribute) (simudo.gui.model.InterfaceBCSpec attribute) TypicalLoggingSetup (class in simudo.util.logging)

U

U (simudo.materials.alloy_optics.OpticsInterpolator attribute) u (simudo.util.blackbody.Blackbody property) u_to_phiqfl() (simudo.physics.poisson_drift_diffusion.Band method) u_to_qfl() (simudo.physics.poisson_drift_diffusion.Band method) ufl_cell (simudo.fem.mesh_util.MeshUtil property) unduplicate_msh3_cells() (simudo.mesh.pygmsh.PygmshMakeRegions method) UniformGenerationAdaptiveStepper (class in simudo.physics.steppers) unit (simudo.gui.batch.BatchTarget attribute) (simudo.gui.model.CallableTopHat attribute) (simudo.gui.model.ExplicitIntensity attribute) (simudo.gui.model.ValueUnit attribute) (simudo.gui.panels.mat_ast.PropertyInfo attribute) unit_registry (simudo.fem.adaptive_stepper.ConstantStepperMixin property) (simudo.fem.mesh_util.MeshUtil attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess property) (simudo.physics.material.Material property) (simudo.physics.optical.AbsorptionRangesHelper property) (simudo.physics.optical.OpticalField property) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin property) units() (simudo.fem.mesh_util.MeshUtil method) unsigned() (simudo.mesh.topology.FacetRegion method) untransform() (simudo.mesh.construction_helper.InvertibleTransform method) untransform_coordinates() (simudo.mesh.construction_helper.InvertibleTransform method) (simudo.mesh.construction_helper.LinearTransform method) update() (simudo.fem.offset_partitioning.PartitionOffsets method) (simudo.util.name_dict.NameDict method) update_input() (simudo.physics.optical.OpticalField method) update_layers_badge() (simudo.gui.app.SimudoApp method) update_output() (simudo.physics.optical.OpticalField method) update_parameter() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) update_parameter_failure_factor (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) update_parameter_success_factor (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.UniformGenerationAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute)

update_ufl_expr_classes() (in module simudo.fem.compat.ufl_classes_update) use_alternative_BC (simudo.physics.heterojunction.ThermionicHeterojunction attribute) use_constant_mobility (simudo.physics.poisson_drift_diffusion.IntermediateBand attribute) use_nondegen (simudo.physics.heterojunction.ThermionicHeterojunction attribute) used_cell_values (simudo.mesh.construction_helper.BaseConstructionHelper attribute) user_apply_parameter_to_solution() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.ConstantStepperMixin method) (simudo.physics.steppers.VoltageStepper method) user_define_interval_regions() (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh method) (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure method) user_define_mshr_regions() (simudo.mesh.construction_helper.ConstructionHelperMshr method) (simudo.mesh.construction_helper_example.Bob method) user_density_function() (simudo.mesh.construction_helper.ConstructionHelperPygmsh2 method) user_extra_definitions() (simudo.mesh.construction_helper.BaseConstructionHelper method) (simudo.mesh.construction_helper_example.Bob method) user_just_generate_mesh() (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) user_layer_extra_intervals() (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure method) user_make_solver() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.physics.steppers.NonequilibriumCoupledStepper method) user_mark_external_boundary_facets() (simudo.mesh.construction_helper.BaseConstructionHelper method) (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh method) user_modify_meta() (simudo.mesh.construction_helper.BaseConstructionHelper method) user_refinement() (simudo.mesh.construction_helper.BaseConstructionHelper method) (simudo.mesh.construction_helper_example.Bob method) user_solution_add() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) user_solution_save() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) user_solver() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) (simudo.physics.steppers.NonequilibriumCoupledStepper method) user_tag_cell() (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) user_tag_cells() (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) user_update_solution_vector() (simudo.fem.newton_solver.NewtonSolver method) (simudo.fem.newton_solver.NewtonSolverLogDamping method) (simudo.fem.newton_solver.NewtonSolverMaxDu method) util_define_internal() (simudo.mesh.construction_helper.BaseConstructionHelper method) util_init_cf_from_domains() (simudo.mesh.construction_helper.BaseConstructionHelper method)

V

V (simudo.fem.plot.BaseDolfinFunctionRenderFrame attribute) v_row() (simudo.example.fourlayer.sweep_extraction.SweepData method) vacuum_wavelength (simudo.physics.optical.OpticalField property) value (simudo.fem.sympy_dolfin_printer.DolfinConstant property) (simudo.gui.model.CallableTopHat attribute) (simudo.gui.model.ExplicitIntensity attribute) (simudo.gui.model.ValueUnit attribute) (simudo.gui.panels.mat_ast.PropertyInfo attribute) (simudo.physics.poisson_drift_diffusion.SaveItem attribute) value_already_computed() (in module simudo.gui.panels.shared) value_extractor (simudo.fem.spatial.CombinedBoundaryCondition attribute) value_rules (simudo.fem.spatial.Spatial attribute) value_shape (simudo.fem.plot.DolfinFunctionRenderer attribute) ValueRule (class in simudo.fem.spatial) values (simudo.gui.batch.BatchVariation attribute) (simudo.gui.model.VoltageSweepSettings attribute) values() (simudo.util.name_dict.NameDict method) ValueUnit (class in simudo.gui.model) variations (simudo.gui.batch.BatchSpec attribute) vector_function_to_Expression() (in module simudo.fem.expr) vegard() (simudo.materials.helpers.Alloy method) vertices_at_ix() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) vertices_at_iy() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method)

view() (simudo.gui.app.SimudoApp method) (simudo.gui.panels.bands.BandsPanel method) (simudo.gui.panels.bcs.BCsPanel method) (simudo.gui.panels.layers.LayersPanel method) (simudo.gui.panels.materials.MaterialsPanel method) (simudo.gui.panels.opt_fields.OptFieldsPanel method) (simudo.gui.panels.output.OutputPanel method) (simudo.gui.panels.processes.ProcessesPanel method) (simudo.gui.panels.simulation.SimulationPanel method) (simudo.gui.panels.stub.StubPanel method) voc_row (simudo.example.fourlayer.sweep_extraction.SweepData attribute) voltage_step_plots() (in module simudo.example.marti2002.marti2002_plot) (in module simudo.example.pn_benchmark.pn_benchmark_plot) voltage_sweep (simudo.gui.model.CheckpointsSettings attribute) (simudo.gui.model.SimulationSettings attribute) VoltageStepper (class in simudo.physics.steppers) VoltageSweepSettings (class in simudo.gui.model) vs_filename (simudo.io.output_writer.OutputWriter attribute) vs_output_x (simudo.io.output_writer.OutputWriter attribute) vs_output_y (simudo.io.output_writer.OutputWriter attribute) vs_plot() (in module simudo.io.output_writer) vs_write_quantities (simudo.io.output_writer.OutputWriter attribute) vth (simudo.physics.heterojunction.ThermionicHeterojunction property)

W

wavelengths (simudo.materials.alloy_optics.OpticsInterpolator attribute) with_default_kwargs() (in module simudo.util.with_default_kwargs) WithSubfunctionsMixin (class in simudo.fem.function_space) write_heterojunction_boundary_condition() (in module simudo.io.output_writer)

write_json_meta() (simudo.util.xcsv.XCSVWriter method) write_output() (simudo.io.output_writer.OutputWriter method) write_xdmf_checkpoint() (simudo.fem.adaptive_stepper.AdaptiveStepper method) writer_class (simudo.util.xcsv.XCSV attribute)

X

xattr() (in module simudo.io.h5yaml) XCSV (class in simudo.util.xcsv) XCSVBase (class in simudo.util.xcsv) XCSVReader (class in simudo.util.xcsv) XCSVWriter (class in simudo.util.xcsv) xdmf_mesh (simudo.gui.model.OutputSettings attribute) xdmf_output (simudo.mesh.construction_helper.ConstructionHelperPygmsh2 attribute)

XdmfPlot (class in simudo.io.xdmf) XDumper (class in simudo.io.h5yaml) xlistdir() (in module simudo.util.os) XLoader (class in simudo.io.h5yaml) (class in simudo.pyaml.pyaml1) Xs (simudo.fem.plot.DolfinFunctionRenderFrame attribute) xtimeit() (in module simudo.util.xtimeit)

Y

yaml_classes (simudo.io.h5yaml.BaseCustomTag attribute) (simudo.io.h5yaml.DolfinFunctionTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionBoolTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionDoubleTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionIntTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionSizetTag attribute) (simudo.io.h5yaml.DolfinMeshTag attribute) (simudo.io.h5yaml.FrozenSetTag attribute) (simudo.io.h5yaml.PintQTag attribute) (simudo.pyaml.pyaml1.BaseCustomTag attribute) yaml_constructors (simudo.io.h5yaml.XLoader attribute) (simudo.pyaml.pyaml1.XLoader attribute) yaml_multi_representers (simudo.io.h5yaml.XDumper attribute)

yaml_tag (simudo.io.h5yaml.BaseCustomTag attribute) (simudo.io.h5yaml.BaseDolfinMeshFunctionTag property) (simudo.io.h5yaml.DolfinFunctionTag attribute) (simudo.io.h5yaml.DolfinMeshTag attribute) (simudo.io.h5yaml.FrozenSetTag attribute) (simudo.io.h5yaml.PintQTag attribute) (simudo.pyaml.pyaml1.BaseCustomTag attribute) (simudo.pyaml.pyaml1.YCode2Tag attribute) (simudo.pyaml.pyaml1.YCodeTag attribute) YAMLLoader (simudo.pyaml.pyaml1.CodeGenerator attribute) YCode2Tag (class in simudo.pyaml.pyaml1) YCodeTag (class in simudo.pyaml.pyaml1) Ys (simudo.fem.plot.DolfinFunctionRenderFrame attribute)

Z

ZeroAreaWarning