Index

_

__and__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method) __getattr__() (simudo.mesh.topology.CellRegions method) __getitem__() (simudo.mesh.topology.CellRegions method) __new__() (simudo.mesh.topology.CellRegion static method) (simudo.mesh.topology.FacetRegion static method) __or__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method)

__sub__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method) __xor__() (simudo.mesh.topology.CellRegion method) (simudo.mesh.topology.FacetRegion method) _mapping_ (simudo.mesh.topology.CellRegions attribute) _sloppy (simudo.fem.mesh_util.MeshUtil attribute)

A

A (simudo.fem.newton_solver.NewtonSolution attribute) abs() (simudo.fem.delayed_form.DelayedForm method) AbsorptionAndRadiativeRecombinationEOPMixin (class in simudo.physics.electro_optical_process) AbsorptionRangesHelper (class in simudo.physics.optical) acquire() (simudo.fem.ffc_jit_lock.LockFile method) adapt() (in module simudo.mesh.refine) adapt_mf() (in module simudo.mesh.refine) AdaptiveStepper (class in simudo.fem.adaptive_stepper) add() (simudo.io.xdmf.PlotAddMixin method) (simudo.util.name_dict.NameDict method) add_band() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) add_BC() (simudo.fem.spatial.Spatial method) add_material_data() (simudo.fem.spatial.Spatial method) add_prior_solution() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) add_quantity() (simudo.io.output_writer.MetaExtractorIntegrals method) add_row() (simudo.io.output_writer.MetaCSVWriter method) add_rule() (simudo.fem.spatial.Spatial method) add_surface_flux() (simudo.io.output_writer.MetaExtractorIntegrals method) add_surface_total() (simudo.io.output_writer.MetaExtractorIntegrals method)

add_value_rule() (simudo.fem.spatial.Spatial method) add_volume_total() (simudo.io.output_writer.MetaExtractorIntegrals method) after_modification() (simudo.mesh.construction_helper.InvertibleTransform method) algo_fvs_to_cell_averages() (simudo.fem.spatial.CombinedBoundaryCondition method) algo_get_fv_adjacent_cells() (simudo.fem.spatial.CombinedBoundaryCondition method) allocate_subdomain_range() (simudo.mesh.construction_helper.BaseConstructionHelper method) alpha (simudo.physics.optical.OpticalField attribute), [1] AlwaysTruePredicate (class in simudo.mesh.mesh_entity_predicate) AndMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) arg_matplotlib() (in module simudo.plot.plot) as_isolated_method_in_module() (simudo.pyaml.pyaml1.CodeGenerator method) assert_compatible_predicates() (simudo.mesh.mesh_entity_predicate.BaseMeshEntityPredicate class method) assert_gen_reg() (simudo.mesh.domaintag_mshr.DomainTagTest method) assert_rel() (simudo.mesh.domaintag_mshr.DomainTagTest method) assign() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) assign_scalar() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) AssignmentError at_thermal_equilibrium (simudo.physics.poisson_drift_diffusion.Poisson attribute) AttrPrefixProxy (class in simudo.util.attrproxy) auto_cache (simudo.pyaml.pyaml1.CodeTag attribute)

B

b (simudo.fem.newton_solver.NewtonSolution attribute) b_norm (simudo.fem.newton_solver.NewtonSolution attribute) BadSimpleSiliconMaterial (class in simudo.physics.material) Band (class in simudo.physics.poisson_drift_diffusion) bands (simudo.physics.optical.AbsorptionRangesHelper attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute), [1] BaseAdaptiveStepper (class in simudo.fem.adaptive_stepper) BaseConstructionHelper (class in simudo.mesh.construction_helper) BaseCustomTag (class in simudo.io.h5yaml) (class in simudo.pyaml.pyaml1) BaseDolfinFunctionRenderFrame (class in simudo.fem.plot)

BaseDolfinMeshFunctionTag (class in simudo.io.h5yaml) BaseInterval1DTag (class in simudo.mesh.interval1dtag) BaseMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) BaseText (class in simudo.plot.plot) bbox_vecs() (in module simudo.fem.expr) bc_cells (simudo.fem.offset_partitioning.PartitionOffsets attribute), [1] bcs (simudo.fem.spatial.Spatial attribute), [1] both() (simudo.mesh.topology.FacetRegion method) boundary() (simudo.mesh.facet.FacetsManager method) (simudo.mesh.topology.CellRegion method) BoundaryCondition (class in simudo.fem.spatial) break_criteria_cb (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute)

C

call() (simudo.io.output_writer.MetaExtractorBandInfo method) (simudo.io.output_writer.MetaExtractorIntegrals method) cartesian_product() (in module simudo.util.cartesian_product) cell_function (simudo.fem.mesh_data.MeshData attribute) (simudo.fem.mesh_util.MeshUtil attribute) cell_function_function (simudo.fem.mesh_util.MeshUtil attribute) cell_predicate_expr_threshold() (in module simudo.mesh.refine) cell_to_cells_adjacency_via_facet (simudo.fem.mesh_data.MeshData attribute) cell_value_internal() (simudo.mesh.facet.FacetsManager method) CellFunctionFunction (class in simudo.fem.expr) CellMidpointExpression (class in simudo.fem.expr) CellRegion (class in simudo.mesh.topology) CellRegions (class in simudo.mesh.topology) cells (simudo.io.output_writer.MetaExtractorIntegrals attribute) cells_at_ix() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) CInterval (class in simudo.mesh.interval1dtag) ClassProperty (class in simudo.io.h5yaml) cleanup_prior_solutions() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) clear() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) clever_legend() (in module simudo.plot.plot) clip_intervals() (in module simudo.mesh.interval1dtag) close() (simudo.fem.ipython.LineCutPlot method) (simudo.io.csv.LineCutCsvPlot method) (simudo.io.xdmf.XdmfPlot method) code (simudo.pyaml.pyaml1.CodeTag attribute) CodeGenerator (class in simudo.pyaml.pyaml1) CodeTag (class in simudo.pyaml.pyaml1) CombinedBoundaryCondition (class in simudo.fem.spatial) CombiningMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate)

compute_facets() (simudo.mesh.construction_helper.BaseConstructionHelper method) compute_meta() (simudo.util.xcsv.XCSVWriter method) compute_V() (simudo.fem.plot.BaseDolfinFunctionRenderFrame method) (simudo.fem.plot.DolfinFunctionRenderFrame method) console_formatter (simudo.util.logging.TypicalLoggingSetup attribute) constantify_if_literal() (in module simudo.fem.expr) constants (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) ConstantStepperMixin (class in simudo.fem.adaptive_stepper) ConstructionHelperIntervalProduct2DMesh (class in simudo.mesh.construction_helper) ConstructionHelperIntervalProduct2DMesh.Interval1DTag (class in simudo.mesh.construction_helper) ConstructionHelperLayeredStructure (class in simudo.mesh.construction_helper) ConstructionHelperManualCellTagging (class in simudo.mesh.construction_helper) ConstructionHelperMshr (class in simudo.mesh.construction_helper) ConstructionHelperPygmsh (class in simudo.mesh.construction_helper) coordinates (simudo.fem.plot.DolfinFunctionRenderFrame attribute) (simudo.fem.plot.DolfinFunctionRenderLineCutFrame attribute) (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) coordinates() (simudo.fem.plot.LineCutter method) copy() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) (simudo.fem.newton_solver.NewtonSolution method) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) (simudo.util.name_dict.NameDict method) copy_to() (simudo.fem.newton_solver.NewtonSolution method) create_function_from_x_values() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) create_plot() (simudo.fem.ipython.LineCutPlot method) create_renderer() (simudo.fem.ipython.LineCutPlot method) create_solution() (simudo.fem.newton_solver.NewtonSolver method) custom_file_open() (simudo.util.pint.XUnitRegistry method)

D

DarkEOPMixin (class in simudo.physics.electro_optical_process) debug_cvs_to_mf() (simudo.mesh.construction_helper.BaseConstructionHelper method) debug_filename (simudo.util.logging.TypicalLoggingSetup attribute) debug_fill_with_zero_except_bc (simudo.fem.offset_partitioning.PartitionOffsets attribute) debug_fvs_to_mf() (simudo.mesh.construction_helper.BaseConstructionHelper method) debug_plot() (simudo.mesh.construction_helper.BaseConstructionHelper method) default_assumptions (simudo.fem.sympy_dolfin_printer.DolfinConstant attribute) default_extract_params (simudo.fem.ipython.LineCutPlot attribute) default_value (simudo.fem.plot.DolfinFunctionRenderer attribute) DefaultProblemDataChildMixin (class in simudo.physics.problem_data_child) DelayedForm (class in simudo.fem.delayed_form) delete_attached() (in module simudo.io.h5yaml) delete_partials() (simudo.io.xdmf.XdmfPlot static method) delete_units() (simudo.fem.delayed_form.DelayedForm method) depth (simudo.pyaml.pyaml1.CodeGenerator attribute) derivative() (simudo.fem.ufl_extra.ExpM1 method) df_add_drift_diffusion_terms() (in module simudo.plot.postprocessing) dict (simudo.physics.material.Material attribute) DictAttrProxy (class in simudo.util.attrproxy) dim (simudo.mesh.construction_helper.BaseConstructionHelper attribute) (simudo.mesh.mesh_entity_predicate.BaseMeshEntityPredicate attribute) (simudo.mesh.mesh_entity_predicate.DirectionalEdgeLengthPredicate attribute) DimensionAdapterPredicate (class in simudo.mesh.mesh_entity_predicate) dir_as_prefix() (in module simudo.util.os) DirectionalEdgeLengthPredicate (class in simudo.mesh.mesh_entity_predicate) display() (simudo.fem.ipython.DisplayMixin method) DisplayMixin (class in simudo.fem.ipython) dless() (simudo.fem.mesh_util.MeshUtil method) do_assemble_system() (simudo.fem.newton_solver.NewtonSolution method) do_before_first_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_init_assembler() (simudo.fem.newton_solver.NewtonSolver method) do_init_parameters() (simudo.fem.newton_solver.NewtonSolver method) do_init_solution() (simudo.fem.newton_solver.NewtonSolver method) do_invalidate_cache() (simudo.fem.newton_solver.NewtonSolution method) do_iteration() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) (simudo.fem.newton_solver.NewtonSolver method)

do_linear_solve() (simudo.fem.newton_solver.NewtonSolution method) do_loop() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) do_post_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_pre_iteration_hook() (simudo.fem.newton_solver.NewtonSolver method) do_update_solution() (simudo.fem.newton_solver.NewtonSolver method) dofs_coordinates() (in module simudo.fem.expr) dolfin (simudo.util.logging.TypicalLoggingSetup attribute) DolfinConstant (class in simudo.fem.sympy_dolfin_printer) DolfinFunctionLineCutRenderer (class in simudo.fem.plot) DolfinFunctionRenderer (class in simudo.fem.plot) DolfinFunctionRenderFrame (class in simudo.fem.plot) DolfinFunctionRenderLineCutFrame (class in simudo.fem.plot) DolfinFunctionTag (class in simudo.io.h5yaml) DolfinH5Manager (class in simudo.io.h5yaml) DolfinMeshFunctionBoolTag (class in simudo.io.h5yaml) DolfinMeshFunctionDoubleTag (class in simudo.io.h5yaml) DolfinMeshFunctionIntTag (class in simudo.io.h5yaml) DolfinMeshFunctionSizetTag (class in simudo.io.h5yaml) DolfinMeshTag (class in simudo.io.h5yaml) DolfinObjectTag (class in simudo.io.h5yaml) DolfinPrinter (class in simudo.fem.sympy_dolfin_printer) domain_relationship() (simudo.mesh.domaintag_mshr.DomainTag method) (simudo.mesh.domaintag_mshr.MshrDomainTag method) domain_relationship_tabulate() (simudo.mesh.domaintag_mshr.DomainTag method) DomainTag (class in simudo.mesh.domaintag_mshr) DomainTagTest (class in simudo.mesh.domaintag_mshr) doprint() (simudo.fem.sympy_dolfin_printer.DolfinPrinter method) downproject() (in module simudo.fem.ipython) dst_band (simudo.physics.electro_optical_process.TwoBandEOPMixin attribute) dtypes_dict (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) du_mask_array (simudo.fem.newton_solver.NewtonSolver attribute) du_norm (simudo.fem.newton_solver.NewtonSolution attribute) dump() (in module simudo.io.h5yaml)

E

E (simudo.physics.poisson_drift_diffusion.Poisson attribute) easy_add_band() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_add_electro_optical_process() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_add_electrostatic_potential_BC() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_add_field() (simudo.physics.optical.Optical method) easy_add_two_traps_to_pdd() (simudo.physics.electro_optical_process.TrapEOPMixin class method) easy_auto_pre_solve() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) easy_create_newton_solver() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) effective_density_of_states (simudo.physics.poisson_drift_diffusion.NondegenerateBand attribute) effective_energy_level (simudo.physics.poisson_drift_diffusion.NondegenerateBand attribute) electro_optical_processes (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute), [1] ElectroOpticalProcess (class in simudo.physics.electro_optical_process) element (simudo.fem.function_space.MixedFunctionSpace attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) element() (simudo.fem.mesh_util.MeshUtil method) emit() (simudo.pyaml.pyaml1.CodeGenerator method) emit_eval_auto_call() (simudo.pyaml.pyaml1.CodeGenerator method) emit_str() (simudo.pyaml.pyaml1.CodeGenerator method) emptyPrinter() (simudo.fem.sympy_dolfin_printer.DolfinPrinter method) enable_radiative_recombination (simudo.physics.electro_optical_process.AbsorptionAndRadiativeRecombinationEOPMixin attribute) energy_level (simudo.physics.poisson_drift_diffusion.IntermediateBand attribute) (simudo.physics.poisson_drift_diffusion.NondegenerateBand attribute)

energy_unit (simudo.physics.optical.AbsorptionRangesHelper attribute) ensure_dir() (simudo.io.h5yaml.DolfinH5Manager method) ensure_open() (simudo.io.xdmf.XdmfPlot method) ensure_parent_dir() (simudo.util.logging.TypicalLoggingSetup method) ensure_quantity() (simudo.fem.mesh_util.MeshUtil method) entity_dofs() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) env (simudo.pyaml.pyaml1.CodeTag attribute) escaped (simudo.pyaml.multidict.EscapeMultidictKey attribute) EscapeMultidictKey (class in simudo.pyaml.multidict) eval_cell() (simudo.fem.expr.CellMidpointExpression method) evaluate_function_at_coordinates() (in module simudo.fem.plot) (simudo.fem.plot.BaseDolfinFunctionRenderFrame method) evaluate_topology() (simudo.fem.mesh_data.MeshData method) ExitOptimizerException ExpM1 (class in simudo.fem.ufl_extra) expm1() (in module simudo.fem.ufl_extra) extent (simudo.fem.ipython.LineCutPlot attribute) extra_iterations (simudo.fem.newton_solver.NewtonSolver attribute) extract() (simudo.fem.plot.BaseDolfinFunctionRenderFrame method) extract_params (simudo.fem.plot.BaseDolfinFunctionRenderFrame attribute) extracted_T (simudo.fem.plot.DolfinFunctionRenderLineCutFrame attribute) extracted_V (simudo.fem.plot.BaseDolfinFunctionRenderFrame attribute)

F

facet2d_angle() (in module simudo.mesh.facet) facet_function (simudo.fem.mesh_data.MeshData attribute) (simudo.fem.mesh_util.MeshUtil attribute) FacetRegion (class in simudo.mesh.topology) FacetRegions (class in simudo.mesh.topology) facets (simudo.io.output_writer.MetaExtractorIntegrals attribute) facets_manager (simudo.fem.mesh_data.MeshData attribute) facets_name_to_fvs (simudo.fem.mesh_data.MeshData attribute) FacetsManager (class in simudo.mesh.facet) fchainmap() (in module simudo.fem.ipython) fields (simudo.physics.optical.Optical attribute), [1] figclosing() (in module simudo.plot.plot) file_save (simudo.physics.poisson_drift_diffusion.SaveItem attribute) filename_from_key() (simudo.io.h5yaml.DolfinH5Manager method) filter() (simudo.util.logging.NameLevelFilter method) find_globals() (in module simudo.pyaml.astglobals) FindFreeVariablesClassWarning first_cell_value (simudo.mesh.domaintag_mshr.DomainTag attribute) (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) fix_facets_after_subdivision() (simudo.mesh.construction_helper.BaseConstructionHelper method) fix_undefined_facets_after_subdivision() (simudo.mesh.facet.FacetsManager method) flip() (simudo.mesh.topology.FacetRegion method) force_single_thread (simudo.fem.ipython.LineCutPlot.RenderingPlot attribute) force_ufl() (in module simudo.fem.expr) format_parameter() (simudo.io.output_writer.OutputWriter method) format_string_system() (in module simudo.util.string_system) frame_class (simudo.fem.plot.DolfinFunctionLineCutRenderer attribute) (simudo.fem.plot.DolfinFunctionRenderer attribute) from_axes() (simudo.plot.plot.LegendText class method) from_existing_mesh_cf() (simudo.mesh.construction_helper.BaseConstructionHelper class method) from_nice_obj() (simudo.fem.newton_solver.NewtonSolver class method)

from_sum() (simudo.fem.delayed_form.DelayedForm class method) from_union() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry class method) from_yaml() (simudo.io.h5yaml.DolfinObjectTag class method) (simudo.io.h5yaml.FrozenSetTag class method) (simudo.io.h5yaml.PintQTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) (simudo.pyaml.pyaml1.YCode2Tag class method) (simudo.pyaml.pyaml1.YCodeTag class method) FrozenSetTag (class in simudo.io.h5yaml) FSRError fullsplit() (in module simudo.util.os) function (simudo.fem.offset_partitioning.PartitionOffsets attribute) Function() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) Function_eval_many() (in module simudo.fem.extra_bindings) function_space (simudo.fem.function_space.MixedFunctionSpace attribute) function_space_cache (simudo.fem.function_space.MixedFunctionHelper attribute) (simudo.fem.mesh_util.MeshUtil attribute), [1] (simudo.physics.problem_data.ProblemData attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin attribute) function_subspace_registry (simudo.fem.mesh_util.MeshUtil attribute), [1] (simudo.physics.optical.OpticalField attribute) (simudo.physics.problem_data.ProblemData attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin attribute) function_subspaces (simudo.fem.function_space.MixedFunctionSpace attribute) FunctionSpace() (simudo.fem.function_space_cache.FunctionSpaceCache method) FunctionSpaceCache (class in simudo.fem.function_space_cache) FunctionSubspaceRegistry (class in simudo.fem.function_subspace_registry) FunctionTypeError fv_adjacent_cellavg (simudo.fem.spatial.CombinedBoundaryCondition attribute) fv_adjacent_cells (simudo.fem.spatial.CombinedBoundaryCondition attribute) fv_adjacent_cells_function (simudo.fem.spatial.CombinedBoundaryCondition attribute) fv_set (simudo.fem.spatial.CombinedBoundaryCondition attribute), [1]

G

g (simudo.physics.optical.OpticalField attribute), [1] (simudo.physics.poisson_drift_diffusion.Band attribute) gdim (simudo.mesh.construction_helper.BaseConstructionHelper attribute) generate_base32_token() (in module simudo.util.base32_token) generate_intersection_regions() (simudo.mesh.domaintag_mshr.DomainTag method) generate_mesh() (simudo.mesh.construction_helper.BaseConstructionHelper method) (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh method) (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) (simudo.mesh.construction_helper.ConstructionHelperMshr method) (simudo.mesh.construction_helper.ConstructionHelperPygmsh method) get() (simudo.fem.spatial.Spatial method) get_absorption_bounds() (simudo.physics.electro_optical_process.RadiativeEOPMixin method) get_alpha() (simudo.physics.electro_optical_process.DarkEOPMixin method) (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_alpha_by_optical_field() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_alpha_pdd_expr() (simudo.physics.optical.OpticalField method) get_band_generation_sign() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.TwoBandEOPMixin method) get_capture_coefficient() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_constant_alpha() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert method) get_constant_sigma_opt() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_contact_currents() (in module simudo.io.output_writer) get_current_indent() (simudo.pyaml.pyaml1.CodeGenerator method) get_default_extract_params() (simudo.fem.ipython.LineCutPlot method) get_dict() (simudo.physics.material.BadSimpleSiliconMaterial method) (simudo.physics.material.Material method) (simudo.physics.material.SimpleSiliconMaterial method) get_element() (simudo.fem.function_space.MixedFunctionSpace method) get_essential_bc() (simudo.fem.spatial.CombinedBoundaryCondition method) get_essential_bcs() (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.Band method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_frame() (simudo.fem.plot.DolfinFunctionRenderer method) get_full_function_functionspace() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_full_function_functionspace_indices() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_function_space() (simudo.fem.function_space.MixedFunctionSpace method) (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_fv_adjacent_cellavg() (simudo.fem.spatial.CombinedBoundaryCondition method) get_g_pdd_expr() (simudo.physics.optical.OpticalField method) get_generation() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_generation_optical() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_generation_user() (simudo.physics.electro_optical_process.AbsorptionAndRadiativeRecombinationEOPMixin method) (simudo.physics.electro_optical_process.ElectroOpticalProcess method) (simudo.physics.electro_optical_process.NonRadiativeTrap method) (simudo.physics.electro_optical_process.SRHRecombination method) get_iv_prefix() (simudo.io.output_writer.OutputWriter method) get_last_successful() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method)

get_mapped_parameter() (simudo.fem.adaptive_stepper.ConstantStepperMixin method) get_meta_csv_file() (simudo.io.output_writer.OutputWriter method) get_mixed_bc_pair() (simudo.fem.spatial.Spatial method) get_natural_bc() (simudo.fem.spatial.CombinedBoundaryCondition method) get_object_mpi_comm() (simudo.io.h5yaml.DolfinObjectTag class method) get_omega() (simudo.fem.newton_solver.NewtonSolver method) get_optical_generation() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_optical_generation_by_optical_field() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_photon_flux_on_pdd_mesh() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_plot_prefix() (simudo.io.output_writer.OutputWriter method) get_pyplot() (in module simudo.matplotlib_backend) get_quantum_yield() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_quantum_yield_by_optical_field() (simudo.physics.electro_optical_process.ElectroOpticalProcess method) get_radiative_pseudo_capture_coefficient() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_radiative_recombination() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert method) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_renderer_extract_params() (simudo.fem.ipython.LineCutPlot method) get_shockley_read_trap_generation() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_sigma_opt() (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB method) get_sigma_th() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_single_essential_bc() (simudo.fem.spatial.Spatial method) get_solution_function() (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_strandberg_I() (simudo.physics.electro_optical_process.RadiativeEOPMixin method) get_subfunction() (simudo.fem.function_space.WithSubfunctionsMixin method) get_subproblem_children() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_subspace_descriptors_for_solution_space() (simudo.physics.optical.OpticalField method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_tau() (simudo.physics.electro_optical_process.SRHRecombination method) (simudo.physics.electro_optical_process.TrapEOPMixin method) get_to_save() (simudo.physics.optical.Optical method) (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.GetToSaveMixin method) (simudo.physics.poisson_drift_diffusion.Poisson method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) get_transition_bounds() (simudo.physics.optical.AbsorptionRangesHelper method) get_transition_lower_bounds() (simudo.physics.optical.AbsorptionRangesHelper method) get_trap_concentration() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_trap_energy_level() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_trap_process_name() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_u1() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_v_th() (simudo.physics.electro_optical_process.TrapEOPMixin method) get_vanilla_bc_pair() (simudo.fem.spatial.Spatial method) get_vector_and_indices() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_vector_and_subspace_info() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) get_weak_form() (simudo.physics.optical.OpticalFieldMSORTE method) (simudo.physics.poisson_drift_diffusion.Band method) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) GetToSaveMixin (class in simudo.physics.poisson_drift_diffusion) goal_abbreviated (simudo.physics.problem_data.ProblemData attribute)

H

has_converged() (simudo.fem.newton_solver.NewtonSolver method)

has_nans (simudo.fem.newton_solver.NewtonSolution attribute) helper_test_roundtrip() (simudo.io.h5yaml.SolutionIOTest method)

I

IdentityEq (class in simudo.fem.spatial) ignore_aliases() (simudo.io.h5yaml.XDumper method) IncompatibleFunctionSpacesError indent_spaces (simudo.pyaml.pyaml1.CodeGenerator attribute) inf_upper_bound (simudo.physics.optical.AbsorptionRangesHelper attribute) info_filename (simudo.util.logging.TypicalLoggingSetup attribute) init_all() (simudo.fem.ipython.LineCutPlot method) init_fig() (simudo.fem.ipython.LineCutPlot method) init_plots() (simudo.fem.ipython.LineCutPlot method) init_renderers() (simudo.fem.ipython.LineCutPlot method) initialize_from() (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion method) InitKwSetattr (class in simudo.pyaml.pyaml1) inplace_dict_map() (in module simudo.mesh.construction_helper) InRadiusCellPredicate (class in simudo.mesh.mesh_entity_predicate) inside_absorption_bounds_conditional() (simudo.physics.electro_optical_process.RadiativeEOPMixin method)

IntermediateBand (class in simudo.physics.poisson_drift_diffusion) internal() (simudo.mesh.facet.FacetsManager method) internal_facets() (simudo.mesh.topology.CellRegion method) Interval (class in simudo.mesh.interval1dtag) Interval1DTag (class in simudo.mesh.interval1dtag) interval_1d_tag (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh attribute) intervals_to_subdomains() (simudo.mesh.interval1dtag.BaseInterval1DTag method) InvertibleTransform (class in simudo.mesh.construction_helper) is_string_column() (simudo.util.xcsv.XCSVBase method) is_ufl_like() (in module simudo.fem.expr) items() (simudo.util.name_dict.NameDict method) iteration (simudo.fem.newton_solver.NewtonSolver attribute), [1] ix_from_vertex() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) iy_from_vertex() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method)

J

j (simudo.physics.poisson_drift_diffusion.Band attribute)

json_path (simudo.util.xcsv.XCSVBase attribute) json_path_from_xcsv_path() (simudo.util.xcsv.XCSVBase method)

K

keep_saved_solutions_count (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) key (simudo.physics.poisson_drift_diffusion.Band attribute) (simudo.physics.poisson_drift_diffusion.Poisson attribute), [1]

keys() (simudo.util.name_dict.NameDict method) kl (in module simudo.io.h5yaml) (in module simudo.pyaml.pyaml1) kT (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute)

L

LagrangeInterpolator_interpolate_Expression() (in module simudo.fem.extra_bindings) layers (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure attribute) legend_text_object (simudo.plot.plot.LegendText attribute) LegendText (class in simudo.plot.plot) LinearTransform (class in simudo.mesh.construction_helper) LineCutCsvPlot (class in simudo.io.csv) LineCutPlot (class in simudo.fem.ipython) LineCutPlot.RenderingPlot (class in simudo.fem.ipython) LineCutter (class in simudo.fem.plot) load() (in module simudo.io.h5yaml)

load_definitions() (simudo.util.pint.XUnitRegistry method) load_into() (simudo.io.h5yaml.DolfinObjectTag method) load_json_meta() (simudo.util.xcsv.XCSVReader method) load_pass (simudo.io.h5yaml.DolfinMeshTag attribute) (simudo.io.h5yaml.DolfinObjectTag attribute) local_edge_length() (simudo.mesh.interval1dtag.CInterval method) LockFile (class in simudo.fem.ffc_jit_lock) log_print() (simudo.fem.newton_solver.NewtonSolver method) logfile_formatter (simudo.util.logging.TypicalLoggingSetup attribute) logger (simudo.fem.newton_solver.NewtonSolver attribute)

M

magnitude() (in module simudo.io.xdmf) (simudo.fem.mesh_util.MeshUtil method) main() (simudo.mesh.construction_helper.BaseConstructionHelper method) make_1d_mesh_from_points() (in module simudo.mesh.mesh1d) make_cases() (simudo.fem.expr.CellFunctionFunction method) make_combined_bc() (simudo.fem.spatial.Spatial method) make_coordinates() (simudo.mesh.interval1dtag.BaseInterval1DTag method) make_function() (simudo.fem.function_space.MixedFunctionSpace method) make_interval_coordinates() (simudo.mesh.interval1dtag.BaseInterval1DTag method) (simudo.mesh.interval1dtag.MinimumCoordinateDistanceMixin method) make_product2d_mesh() (simudo.mesh.interval1dtag.Product2DMeshMixin method) make_solution_mixed_function() (simudo.fem.function_space.MixedFunctionHelper method) make_string_system() (in module simudo.util.string_system) make_subdomains() (simudo.mesh.domaintag_mshr.DomainTag method) make_test_function() (simudo.fem.function_space.MixedFunctionSpace method) make_unit_registry() (in module simudo.util.pint) map (simudo.fem.spatial.CombinedBoundaryCondition attribute), [1] map() (simudo.fem.delayed_form.DelayedForm method) mapping (simudo.fem.sympy_dolfin_printer.DolfinPrinter attribute) (simudo.util.name_dict.NameDict attribute) mark_boundary_facets() (in module simudo.mesh.facet) mark_using_predicate() (in module simudo.mesh.refine) Material (class in simudo.physics.material) material_to_region (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure attribute), [1] material_to_region_map (simudo.fem.mesh_data.MeshData attribute) (simudo.fem.spatial.Spatial attribute) matplotlib_configure_CM_font() (in module simudo.plot.plot) MaxEdgeLengthCellPredicate (class in simudo.mesh.mesh_entity_predicate) mesh (simudo.fem.function_space.MixedFunctionHelper attribute) (simudo.fem.mesh_data.MeshData attribute) (simudo.fem.mesh_util.MeshUtil attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) mesh_bbox() (in module simudo.fem.expr) mesh_data (simudo.fem.mesh_util.MeshUtil attribute) (simudo.fem.spatial.CombinedBoundaryCondition attribute) (simudo.fem.spatial.Spatial attribute) (simudo.mesh.construction_helper.BaseConstructionHelper attribute) (simudo.physics.optical.Optical attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin attribute)

mesh_function_map() (in module simudo.mesh.facet) mesh_unit (simudo.fem.mesh_data.MeshData attribute) (simudo.fem.mesh_util.MeshUtil attribute) mesh_util (simudo.fem.offset_partitioning.PartitionOffsets attribute) (simudo.fem.spatial.Spatial attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin attribute) MeshData (class in simudo.fem.mesh_data) meshfunction_type_name (simudo.io.h5yaml.DolfinMeshFunctionBoolTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionDoubleTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionIntTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionSizetTag attribute) MeshUtil (class in simudo.fem.mesh_util) meta (simudo.io.output_writer.MetaExtractorIntegrals attribute) (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) meta_extractors (simudo.io.output_writer.OutputWriter attribute) MetaCSVWriter (class in simudo.io.output_writer) MetaExtractorBandInfo (class in simudo.io.output_writer) MetaExtractorIntegrals (class in simudo.io.output_writer) minimum_coordinate_distance (simudo.mesh.interval1dtag.MinimumCoordinateDistanceMixin attribute) MinimumCoordinateDistanceMixin (class in simudo.mesh.interval1dtag) mixed_function_helper (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute), [1] mixed_function_solution_object (simudo.physics.optical.OpticalField attribute) mixed_function_space (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) MixedDensityNondegenerateBand (class in simudo.physics.poisson_drift_diffusion) MixedFunctionHelper (class in simudo.fem.function_space) MixedFunctionSpace (class in simudo.fem.function_space) MixedFunctionSpace.MixedFunction (class in simudo.fem.function_space) MixedFunctionSpace.MixedTestFunction (class in simudo.fem.function_space) MixedPoisson (class in simudo.physics.poisson_drift_diffusion) MixedQflIntermediateBand (class in simudo.physics.poisson_drift_diffusion) MixedQflNondegenerateBand (class in simudo.physics.poisson_drift_diffusion) mkdirp() (in module simudo.util.os) mobility (simudo.physics.poisson_drift_diffusion.Band attribute) mpi_comm() (simudo.io.xdmf.XdmfPlot method) mshr_make_subdomains() (simudo.mesh.domaintag_mshr.MshrDomainTag method) MshrDomainTag (class in simudo.mesh.domaintag_mshr) multidict_items() (in module simudo.pyaml.multidict)

N

name (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambert attribute) (simudo.physics.electro_optical_process.NonOverlappingTopHatBeerLambertIB attribute) (simudo.physics.electro_optical_process.NonRadiativeTrap attribute) (simudo.physics.electro_optical_process.SRHRecombination attribute) (simudo.physics.material.BadSimpleSiliconMaterial attribute) (simudo.physics.material.Material attribute), [1] (simudo.physics.material.SimpleSiliconMaterial attribute) (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.Band attribute), [1] (simudo.physics.poisson_drift_diffusion.SaveItem attribute) NameDict (class in simudo.util.name_dict) NameLevelFilter (class in simudo.util.logging) NandMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) nargs (simudo.fem.sympy_dolfin_printer.DolfinConstant attribute) needs_load_into (simudo.io.h5yaml.DolfinObjectTag attribute) new() (simudo.io.csv.LineCutCsvPlot method) (simudo.io.xdmf.XdmfPlot method)

new_independent_function() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) new_jit() (in module simudo.fem.ffc_jit_lock) NewtonBailoutException NewtonSolution (class in simudo.fem.newton_solver) NewtonSolver (class in simudo.fem.newton_solver) NewtonSolverLogDamping (class in simudo.fem.newton_solver) NewtonSolverMaxDu (class in simudo.fem.newton_solver) NondegenerateBand (class in simudo.physics.poisson_drift_diffusion) NonequilibriumCoupledConstantStepper (class in simudo.physics.steppers) NonequilibriumCoupledStepper (class in simudo.physics.steppers) NonOverlappingTopHatBeerLambert (class in simudo.physics.electro_optical_process) NonOverlappingTopHatBeerLambertIB (class in simudo.physics.electro_optical_process) NonRadiativeTrap (class in simudo.physics.electro_optical_process) number_of_states (simudo.physics.poisson_drift_diffusion.IntermediateBand attribute) nX (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) nY (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute)

O

obj_eq() (simudo.util.name_dict.NameDict method) obj_to_key() (simudo.util.name_dict.NameDict method) offset_partitioning_bc_cells (simudo.fem.spatial.CombinedBoundaryCondition attribute) open() (simudo.io.h5yaml.DolfinH5Manager method) (simudo.io.xdmf.XdmfPlot method) opportunistic_assign() (in module simudo.fem.assign) Optical (class in simudo.physics.optical) optical (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.problem_data.ProblemData attribute), [1]

OpticalField (class in simudo.physics.optical) OpticalFieldMSORTE (class in simudo.physics.optical) OpticalIntensityAdaptiveStepper (class in simudo.physics.steppers) OrMeshEntityPredicate (class in simudo.mesh.mesh_entity_predicate) out_function (simudo.fem.offset_partitioning.PartitionOffsets attribute), [1] outdir_path_helper() (in module simudo.util.os) output_writer (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) OutputWriter (class in simudo.io.output_writer)

P

p (simudo.mesh.construction_helper.BaseConstructionHelper attribute) parameter (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute), [1] parameter_start_value (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) parameter_target_values (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) parameter_unit (simudo.fem.adaptive_stepper.ConstantStepperMixin attribute) (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) parameter_value (simudo.io.output_writer.MetaExtractorIntegrals attribute) parse_kv() (in module simudo.util.os) partial_xdmf_file (simudo.io.xdmf.XdmfPlot attribute) PartitionOffsets (class in simudo.fem.offset_partitioning) pdd (simudo.io.output_writer.MetaExtractorIntegrals attribute) (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.material.Material attribute) (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.Band attribute) (simudo.physics.poisson_drift_diffusion.Poisson attribute) (simudo.physics.problem_data.ProblemData attribute), [1] pdftoppm() (in module simudo.plot.pdftoppm) percentile_update_limits() (in module simudo.plot.plot) permittivity (simudo.physics.poisson_drift_diffusion.Poisson attribute) Phi (simudo.physics.optical.OpticalField attribute) phi (simudo.physics.poisson_drift_diffusion.Poisson attribute) Phi_pddproj (simudo.physics.optical.OpticalField attribute), [1] Phi_pddproj_clipped (simudo.physics.optical.OpticalField attribute), [1] Phi_pddproj_space (simudo.physics.optical.Optical attribute) Phi_scale (simudo.physics.optical.Optical attribute), [1] phiqfl_to_u() (simudo.physics.poisson_drift_diffusion.Band method) PintQTag (class in simudo.io.h5yaml) plot01() (in module simudo.plot.plot) PlotAddMixin (class in simudo.io.xdmf) plotobj (simudo.fem.ipython.LineCutPlot.RenderingPlot attribute) point_to_array() (in module simudo.fem.expr) Poisson (class in simudo.physics.poisson_drift_diffusion) poisson (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute), [1] PoissonDriftDiffusion (class in simudo.physics.poisson_drift_diffusion)

powerset() (in module simudo.mesh.domaintag_mshr) predicate_to_meshfunction() (in module simudo.mesh.refine) prefix (simudo.io.output_writer.MetaExtractorBandInfo attribute) (simudo.io.output_writer.MetaExtractorIntegrals attribute), [1] prepare() (simudo.mesh.mesh_entity_predicate.BaseMeshEntityPredicate method) (simudo.mesh.mesh_entity_predicate.CombiningMeshEntityPredicate method) (simudo.mesh.mesh_entity_predicate.DimensionAdapterPredicate method) (simudo.mesh.mesh_entity_predicate.DirectionalEdgeLengthPredicate method) printmethod (simudo.fem.sympy_dolfin_printer.DolfinPrinter attribute) prior_solutions (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) prior_solutions_idx_saved_solution (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) prior_solutions_idx_successful (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) problem_data (simudo.physics.optical.Optical attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) ProblemData (class in simudo.physics.problem_data) process() (simudo.mesh.pygmsh.PygmshMakeRegions method) (simudo.pyaml.pyaml1.CodeGenerator method) process_class() (simudo.pyaml.pyaml1.CodeGenerator method) process_code() (simudo.pyaml.pyaml1.CodeGenerator method) process_eval() (simudo.pyaml.pyaml1.CodeGenerator method) process_string_column() (simudo.util.xcsv.XCSVReader method) product2d_mesh (simudo.mesh.interval1dtag.Product2DMeshMixin attribute) product2d_Ys (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin attribute) Product2DMesh (class in simudo.mesh.product2d) Product2DMeshMixin (class in simudo.mesh.interval1dtag) Product2DMeshMixin.Product2DMesh (class in simudo.mesh.interval1dtag) PYAML_EVAL() (simudo.pyaml.helper.PyamlGetAttr method) PYAML_get_direct_env() (simudo.pyaml.helper.PyamlEnv method) PYAML_get_env() (simudo.pyaml.helper.PyamlEnv method) pyaml_to_python() (simudo.pyaml.pyaml1.CodeGenerator class method) PyamlBase (class in simudo.pyaml.helper) PyamlEnv (class in simudo.pyaml.helper) PyamlGetAttr (class in simudo.pyaml.helper) pygmsh_generate_mesh() (simudo.mesh.construction_helper.ConstructionHelperPygmsh method) PygmshMakeRegions (class in simudo.mesh.pygmsh)

Q

q (simudo.fem.newton_solver.NewtonSolution attribute)

qfl (simudo.physics.poisson_drift_diffusion.Band attribute) qfl_to_u() (simudo.physics.poisson_drift_diffusion.Band method)

R

RadiativeEOPMixin (class in simudo.physics.electro_optical_process) raise_from() (in module simudo.util.raise_from) read_csv() (simudo.util.xcsv.XCSV class method) (simudo.util.xcsv.XCSVReader method) reader_class (simudo.util.xcsv.XCSV attribute) rect() (simudo.mesh.domaintag_mshr.DomainTagTest method) refine_forever() (in module simudo.mesh.refine) refine_subdomains() (simudo.mesh.construction_helper.BaseConstructionHelper method) reg_band (simudo.physics.electro_optical_process.TrapEOPMixin attribute), [1] region_ds_and_dS() (simudo.fem.mesh_util.MeshUtil method) region_dx() (simudo.fem.mesh_util.MeshUtil method) region_name_to_cvs (simudo.fem.mesh_data.MeshData attribute) region_to_subdomain() (simudo.mesh.domaintag_mshr.DomainTag method) register() (simudo.fem.function_subspace_registry.FunctionSubspaceRegistry method) (simudo.physics.material.Material method)

register_in_dumper() (simudo.io.h5yaml.BaseCustomTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) register_in_loader() (simudo.io.h5yaml.BaseCustomTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) rel_du_norm (simudo.fem.newton_solver.NewtonSolution attribute) release() (simudo.fem.ffc_jit_lock.LockFile method) (simudo.fem.sympy_dolfin_printer.DolfinConstant class method) replace() (simudo.util.name_dict.NameDict method) require_natural (simudo.fem.spatial.BoundaryCondition attribute) reset_parameter_to_last_successful() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) resolution (simudo.io.csv.LineCutCsvPlot attribute) result (simudo.pyaml.pyaml1.CodeGenerator attribute) reverse_map (simudo.fem.spatial.CombinedBoundaryCondition attribute), [1] rho (simudo.physics.poisson_drift_diffusion.Poisson attribute) robjs (simudo.mesh.construction_helper.BaseConstructionHelper attribute) run() (simudo.mesh.construction_helper.BaseConstructionHelper method)

S

savefig() (in module simudo.plot.plot) SaveItem (class in simudo.physics.poisson_drift_diffusion) scalar_function_to_Expression() (in module simudo.fem.expr) ScaleDolfinObjectTag (class in simudo.io.h5yaml) ScaleMixin (class in simudo.io.h5yaml) sci_to_latex1() (in module simudo.util.latex) set_problem() (simudo.fem.newton_solver.NewtonSolver method) SetattrInitMixin (class in simudo.util.setattr_init_mixin) setup() (simudo.util.logging.TypicalLoggingSetup method) setup_dolfin_loglevel() (simudo.util.logging.TypicalLoggingSetup method) setup_dolfin_parameters() (in module simudo.fem.dolfin_parameters) setup_filters() (simudo.util.logging.TypicalLoggingSetup method) setup_handlers() (simudo.util.logging.TypicalLoggingSetup method) setup_logging() (simudo.util.logging.TypicalLoggingSetup method) should_stop() (simudo.fem.newton_solver.NewtonSolver method) should_stop_real() (simudo.fem.newton_solver.NewtonSolver method) sign (simudo.physics.poisson_drift_diffusion.Band attribute) simple_overmesh_regions (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure attribute) SimpleSiliconMaterial (class in simudo.physics.material) simudo (module) simudo.fem (module) simudo.fem.adaptive_stepper (module) simudo.fem.assign (module) simudo.fem.delayed_form (module) simudo.fem.dolfin_parameters (module) simudo.fem.expr (module) simudo.fem.extra_bindings (module) simudo.fem.ffc_jit_lock (module) simudo.fem.function_space (module) simudo.fem.function_space_cache (module) simudo.fem.function_subspace_registry (module) simudo.fem.ipython (module) simudo.fem.mesh_data (module) simudo.fem.mesh_util (module) simudo.fem.newton_solver (module) simudo.fem.offset_partitioning (module) simudo.fem.plot (module) simudo.fem.spatial (module) simudo.fem.sympy_dolfin_printer (module) simudo.fem.ufl_extra (module) simudo.io (module) simudo.io.csv (module) simudo.io.h5yaml (module) simudo.io.output_writer (module) simudo.io.xdmf (module) simudo.matplotlib_backend (module) simudo.mesh (module) simudo.mesh.construction_helper (module) simudo.mesh.domaintag_mshr (module) simudo.mesh.facet (module) simudo.mesh.interval1dtag (module) simudo.mesh.mesh1d (module) simudo.mesh.mesh_entity_predicate (module) simudo.mesh.product2d (module) simudo.mesh.pygmsh (module) simudo.mesh.refine (module) simudo.physics (module) simudo.physics.electro_optical_process (module) simudo.physics.material (module) simudo.physics.optical (module) simudo.physics.poisson_drift_diffusion (module) simudo.physics.problem_data (module) simudo.physics.problem_data_child (module) simudo.physics.steppers (module) simudo.plot (module) simudo.plot.matplotlib (module) simudo.plot.pdftoppm (module) simudo.plot.plot (module) simudo.plot.postprocessing (module)

simudo.pyaml (module) simudo.pyaml.astglobals (module) simudo.pyaml.helper (module) simudo.pyaml.load (module) simudo.pyaml.multidict (module) simudo.pyaml.pyaml1 (module) simudo.util (module) simudo.util.attrproxy (module) simudo.util.base32_token (module) simudo.util.cartesian_product (module) simudo.util.latex (module) simudo.util.logging (module) simudo.util.name_dict (module) simudo.util.os (module) simudo.util.pint (module) simudo.util.raise_from (module) simudo.util.raise_from_py3 (module) simudo.util.setattr_init_mixin (module) simudo.util.string_system (module) simudo.util.with_default_kwargs (module) simudo.util.xcsv (module) simudo.util.xtimeit (module) size (simudo.fem.ipython.LineCutPlot.RenderingPlot attribute) (simudo.fem.newton_solver.NewtonSolution attribute) solution (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute) (simudo.io.output_writer.MetaExtractorIntegrals attribute) solution_class (simudo.fem.newton_solver.NewtonSolver attribute) solution_function (simudo.fem.function_space.MixedFunctionHelper attribute) solution_mixed_function_data (simudo.fem.function_space.MixedFunctionHelper attribute) solution_mixed_space (simudo.fem.function_space.MixedFunctionHelper attribute) solution_plot_1d() (in module simudo.io.output_writer) solution_subspace_descriptors (simudo.fem.function_space.WithSubfunctionsMixin attribute) solution_test_function (simudo.fem.function_space.MixedFunctionHelper attribute) SolutionIOTest (class in simudo.io.h5yaml) solve() (simudo.fem.newton_solver.NewtonSolver method) solver_save (simudo.physics.poisson_drift_diffusion.SaveItem attribute) space (simudo.fem.mesh_util.MeshUtil attribute) (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh attribute) (simudo.mesh.product2d.Product2DMesh attribute) Spatial (class in simudo.fem.spatial) spatial (simudo.physics.optical.Optical attribute), [1] (simudo.physics.optical.OpticalField attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) split() (simudo.fem.function_space.MixedFunctionSpace method) src_band (simudo.physics.electro_optical_process.TwoBandEOPMixin attribute) SRHRecombination (class in simudo.physics.electro_optical_process) step_size (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute), [1] (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) str_error() (simudo.fem.newton_solver.NewtonSolution method) stream_console (simudo.util.logging.TypicalLoggingSetup attribute) stream_debug (simudo.util.logging.TypicalLoggingSetup attribute) stream_info (simudo.util.logging.TypicalLoggingSetup attribute) string (simudo.plot.plot.BaseText attribute) (simudo.plot.plot.LegendText attribute) (simudo.plot.plot.TitleText attribute) string_columns (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) string_prefix (simudo.util.xcsv.XCSVReader attribute) (simudo.util.xcsv.XCSVWriter attribute) string_prefix_re (simudo.util.xcsv.XCSVReader attribute) subdomain_internal_facets() (simudo.mesh.topology.CellRegion method) SubdomainCellPredicate (class in simudo.mesh.mesh_entity_predicate) subdomains (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) subfunction_prefix() (simudo.fem.function_space.WithSubfunctionsMixin method) subfunctions_info (simudo.physics.poisson_drift_diffusion.Band attribute) subplots() (in module simudo.plot.plot) subspace_descriptors_dict (simudo.fem.function_space.MixedFunctionSpace attribute) sympy_to_ufl() (in module simudo.fem.sympy_dolfin_printer) sympy_to_ufl_base() (in module simudo.fem.sympy_dolfin_printer)

T

t_bounds (simudo.fem.plot.LineCutter attribute) tag_to_cell_values (simudo.mesh.interval1dtag.BaseInterval1DTag attribute) tau_from_spatial (simudo.physics.electro_optical_process.SRHRecombination attribute) temperature (simudo.physics.material.Material attribute) (simudo.physics.poisson_drift_diffusion.PoissonDriftDiffusion attribute) test_domain_relationship() (simudo.mesh.domaintag_mshr.DomainTagTest method) test_generate_possibilities() (simudo.mesh.domaintag_mshr.DomainTagTest method) test_roundtrip() (simudo.io.h5yaml.SolutionIOTest method) test_roundtrip_with_dedup() (simudo.io.h5yaml.SolutionIOTest method) thermal_equilibrium_phi (simudo.physics.poisson_drift_diffusion.Poisson attribute), [1] thresholds (simudo.fem.offset_partitioning.PartitionOffsets attribute), [1] timestamp (simudo.io.csv.LineCutCsvPlot attribute) (simudo.io.xdmf.XdmfPlot attribute) TitleText (class in simudo.plot.plot) to_csv() (simudo.util.xcsv.XCSV class method) (simudo.util.xcsv.XCSVWriter method) to_save_objects (simudo.fem.adaptive_stepper.AdaptiveStepper attribute) (simudo.physics.steppers.NonequilibriumCoupledStepper attribute)

to_ufl() (simudo.fem.delayed_form.DelayedForm method) to_yaml() (simudo.io.h5yaml.DolfinObjectTag class method) (simudo.io.h5yaml.FrozenSetTag class method) (simudo.io.h5yaml.PintQTag class method) (simudo.pyaml.pyaml1.BaseCustomTag class method) transform() (simudo.mesh.construction_helper.InvertibleTransform method) transform_coordinates() (simudo.mesh.construction_helper.InvertibleTransform method) (simudo.mesh.construction_helper.LinearTransform method) trap_band (simudo.physics.electro_optical_process.SRHRecombination attribute) (simudo.physics.electro_optical_process.TrapEOPMixin attribute) trap_spatial_get() (simudo.physics.electro_optical_process.TrapEOPMixin method) TrapEOPMixin (class in simudo.physics.electro_optical_process) Ts (simudo.fem.plot.DolfinFunctionRenderLineCutFrame attribute) tuple_to_point() (in module simudo.fem.expr) TwoBandEOPMixin (class in simudo.physics.electro_optical_process) TypicalLoggingSetup (class in simudo.util.logging)

U

u (simudo.physics.poisson_drift_diffusion.Band attribute) u_to_phiqfl() (simudo.physics.poisson_drift_diffusion.Band method) u_to_qfl() (simudo.physics.poisson_drift_diffusion.Band method) ufl_cell (simudo.fem.mesh_util.MeshUtil attribute) unduplicate_msh3_cells() (simudo.mesh.pygmsh.PygmshMakeRegions method) unit_registry (simudo.fem.adaptive_stepper.ConstantStepperMixin attribute) (simudo.fem.mesh_util.MeshUtil attribute), [1] (simudo.physics.electro_optical_process.ElectroOpticalProcess attribute) (simudo.physics.material.Material attribute) (simudo.physics.optical.AbsorptionRangesHelper attribute) (simudo.physics.optical.OpticalField attribute) (simudo.physics.problem_data_child.DefaultProblemDataChildMixin attribute) units() (simudo.fem.mesh_util.MeshUtil method) unsigned() (simudo.mesh.topology.FacetRegion method) untransform() (simudo.mesh.construction_helper.InvertibleTransform method) untransform_coordinates() (simudo.mesh.construction_helper.InvertibleTransform method) (simudo.mesh.construction_helper.LinearTransform method) update() (simudo.fem.offset_partitioning.PartitionOffsets method) (simudo.util.name_dict.NameDict method) update_input() (simudo.physics.optical.OpticalField method) update_output() (simudo.physics.optical.OpticalField method) update_parameter() (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) update_parameter_failure_factor (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute), [1] (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) update_parameter_success_factor (simudo.fem.adaptive_stepper.BaseAdaptiveStepper attribute), [1] (simudo.physics.steppers.OpticalIntensityAdaptiveStepper attribute) (simudo.physics.steppers.VoltageStepper attribute) used_cell_values (simudo.mesh.construction_helper.BaseConstructionHelper attribute)

user_apply_parameter_to_solution() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.ConstantStepperMixin method) (simudo.physics.steppers.VoltageStepper method) user_define_interval_regions() (simudo.mesh.construction_helper.ConstructionHelperIntervalProduct2DMesh method) (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure method) user_define_mshr_regions() (simudo.mesh.construction_helper.ConstructionHelperMshr method) user_define_pygmsh_geo() (simudo.mesh.construction_helper.ConstructionHelperPygmsh method) user_extra_definitions() (simudo.mesh.construction_helper.BaseConstructionHelper method) user_just_generate_mesh() (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) user_layer_extra_intervals() (simudo.mesh.construction_helper.ConstructionHelperLayeredStructure method) user_make_solver() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.physics.steppers.NonequilibriumCoupledStepper method) user_mark_external_boundary_facets() (simudo.mesh.construction_helper.BaseConstructionHelper method) user_modify_meta() (simudo.mesh.construction_helper.BaseConstructionHelper method) user_refinement() (simudo.mesh.construction_helper.BaseConstructionHelper method) user_solution_add() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) user_solution_save() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) user_solver() (simudo.fem.adaptive_stepper.AdaptiveStepper method) (simudo.fem.adaptive_stepper.BaseAdaptiveStepper method) (simudo.physics.steppers.NonequilibriumCoupledStepper method) user_tag_cell() (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) user_tag_cells() (simudo.mesh.construction_helper.ConstructionHelperManualCellTagging method) user_update_solution_vector() (simudo.fem.newton_solver.NewtonSolver method) (simudo.fem.newton_solver.NewtonSolverLogDamping method) (simudo.fem.newton_solver.NewtonSolverMaxDu method) util_define_internal() (simudo.mesh.construction_helper.BaseConstructionHelper method) util_init_cf_from_domains() (simudo.mesh.construction_helper.BaseConstructionHelper method)

V

V (simudo.fem.plot.BaseDolfinFunctionRenderFrame attribute) vacuum_wavelength (simudo.physics.optical.OpticalField attribute) value (simudo.fem.sympy_dolfin_printer.DolfinConstant attribute) (simudo.physics.poisson_drift_diffusion.SaveItem attribute) value_extractor (simudo.fem.spatial.CombinedBoundaryCondition attribute) value_rules (simudo.fem.spatial.Spatial attribute), [1] value_shape (simudo.fem.plot.DolfinFunctionRenderer attribute)

ValueRule (class in simudo.fem.spatial) values() (simudo.util.name_dict.NameDict method) vector_function_to_Expression() (in module simudo.fem.expr) vertices_at_ix() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) vertices_at_iy() (simudo.mesh.interval1dtag.Product2DMeshMixin.Product2DMesh method) (simudo.mesh.product2d.Product2DMesh method) VoltageStepper (class in simudo.physics.steppers)

W

with_default_kwargs() (in module simudo.util.with_default_kwargs) WithSubfunctionsMixin (class in simudo.fem.function_space)

write_json_meta() (simudo.util.xcsv.XCSVWriter method) write_output() (simudo.io.output_writer.OutputWriter method) writer_class (simudo.util.xcsv.XCSV attribute)

X

xattr() (in module simudo.io.h5yaml) XCSV (class in simudo.util.xcsv) XCSVBase (class in simudo.util.xcsv) XCSVReader (class in simudo.util.xcsv) XCSVWriter (class in simudo.util.xcsv) xdmf_combine() (in module simudo.io.xdmf) XdmfPlot (class in simudo.io.xdmf)

XDumper (class in simudo.io.h5yaml) xlistdir() (in module simudo.util.os) XLoader (class in simudo.io.h5yaml) (class in simudo.pyaml.pyaml1) Xs (simudo.fem.plot.DolfinFunctionRenderFrame attribute) xtimeit() (in module simudo.util.xtimeit) XUnitRegistry (class in simudo.util.pint)

Y

yaml_classes (simudo.io.h5yaml.BaseCustomTag attribute) (simudo.io.h5yaml.DolfinFunctionTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionBoolTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionDoubleTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionIntTag attribute) (simudo.io.h5yaml.DolfinMeshFunctionSizetTag attribute) (simudo.io.h5yaml.DolfinMeshTag attribute) (simudo.io.h5yaml.FrozenSetTag attribute) (simudo.io.h5yaml.PintQTag attribute) (simudo.pyaml.pyaml1.BaseCustomTag attribute) yaml_constructors (simudo.io.h5yaml.XLoader attribute) (simudo.pyaml.pyaml1.XLoader attribute) yaml_multi_representers (simudo.io.h5yaml.XDumper attribute)

yaml_tag (simudo.io.h5yaml.BaseCustomTag attribute) (simudo.io.h5yaml.BaseDolfinMeshFunctionTag attribute) (simudo.io.h5yaml.DolfinFunctionTag attribute) (simudo.io.h5yaml.DolfinMeshTag attribute) (simudo.io.h5yaml.FrozenSetTag attribute) (simudo.io.h5yaml.PintQTag attribute) (simudo.pyaml.pyaml1.BaseCustomTag attribute) (simudo.pyaml.pyaml1.YCode2Tag attribute) (simudo.pyaml.pyaml1.YCodeTag attribute) YAMLLoader (simudo.pyaml.pyaml1.CodeGenerator attribute) YCode2Tag (class in simudo.pyaml.pyaml1) YCodeTag (class in simudo.pyaml.pyaml1) Ys (simudo.fem.plot.DolfinFunctionRenderFrame attribute)

Z

ZeroAreaWarning